View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_high_17 (Length: 327)
Name: NF18654_high_17
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 2487117 - 2486801
Alignment:
| Q |
11 |
agaatatcaggtcaagcaagaacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcgcaattggaa |
110 |
Q |
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| T |
2487117 |
agaatatcaggtcaagcaagaacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcacaattggaa |
2487018 |
T |
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| Q |
111 |
gaaccatatctactttgaatctgcaaagataacaaccaaccattatgcgcatgacaaacataagaaattttcaaatgacacaannnnnnnnccaactcac |
210 |
Q |
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| T |
2487017 |
gaaccatatctactttgaatctgcaaagataacaaccagccattatgtgcatgacaaacataagaaattttcaaatgacacaattttttttccaactcac |
2486918 |
T |
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| Q |
211 |
cttcaatgaaaagtcagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttctgcgagatat |
310 |
Q |
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| T |
2486917 |
cttcaatgaaaagtcagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttctgcgagatat |
2486818 |
T |
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| Q |
311 |
gaacaggggaagttttg |
327 |
Q |
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| T |
2486817 |
gaacaggggaagttttg |
2486801 |
T |
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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 41594109 - 41594205
Alignment:
| Q |
205 |
actcaccttcaatgaaaagtcagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttct |
301 |
Q |
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| T |
41594109 |
actcaccttcaatgaaaagtcagttaaatccaagagaagcaacttggcctcaaagtaatgagccaaagccttggcaagcacttgttggtaaagttct |
41594205 |
T |
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