View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_high_19 (Length: 312)
Name: NF18654_high_19
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 41734548 - 41734841
Alignment:
| Q |
1 |
gcctttcgaacgaggttaatgtaatttcctttgtatataaatgaatactaccaacgtaatcggtgaggacaagaccgtcgcagaaccttccagacggttt |
100 |
Q |
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| T |
41734548 |
gcctttcgaacgaggtaaatgtaatttcctttgtatataaataaatactaccaacgtaatcggtgaggacaagaccgtcgcagaaccttccagacggttt |
41734647 |
T |
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| Q |
101 |
accaggaaaactgattccataaggaggattataagatcctgagttcaagaaattccctgtgtcaacataggagtccccaaagacaaacagttttaaagag |
200 |
Q |
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| T |
41734648 |
accaggaaaactgattccataaggaggattataagatcctgagttcaagaaattccctgtgtcaacataggagtccccaaagacaaacagttttaaagag |
41734747 |
T |
|
| Q |
201 |
tttgtattgttgtatgctccatgtgacttttttgctccttccactactgcaacatttgcattaatcagttctacaattaccaaccaataaaatg |
294 |
Q |
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| T |
41734748 |
tttgtattgttgtatgctccatgtgacttttttgctccttccactcctgcaacatttgcattaatcagttctacaattaccaaccattaaaatg |
41734841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 41749173 - 41749317
Alignment:
| Q |
49 |
taccaacgtaatcggtgaggacaagaccgtcgcagaaccttccagacggtttaccaggaaaactgattccataaggaggattataagatcctgagttcaa |
148 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| | ||||| ||| |||| | || |
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| T |
41749173 |
taccaacgtaatcggtgaggacacgaccgtcggagaaccttccagaaggtttaccaggaaaagtgattccataaggaagcttatatgatggtgaggtaaa |
41749272 |
T |
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| Q |
149 |
gaaattccctgtgtcaacataggagtccccaaagacaaacagttt |
193 |
Q |
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| T |
41749273 |
gtaatttcctgtatcaacatatgagtctccaaatacaaatagttt |
41749317 |
T |
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