View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_high_29 (Length: 253)
Name: NF18654_high_29
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 44869971 - 44870147
Alignment:
| Q |
1 |
ataaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttc |
100 |
Q |
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| T |
44869971 |
ataaattttgatcctgctcttttgtcgatgccgggtcccagtcttcccaatttttatctacaaactcagtgccctcaaaacaattctggattctcatttc |
44870070 |
T |
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| Q |
101 |
ctaacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
177 |
Q |
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| T |
44870071 |
ctaacctgataggtacggaacattgtaatgtctatgtatgataacggatatgaaattgaatcaacaggtgtttctgt |
44870147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 44870182 - 44870245
Alignment:
| Q |
175 |
tgtgccattctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaagt |
238 |
Q |
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| T |
44870182 |
tgtgccattctttatgtttccatgagccgtgtagacacaggactggatgtgtttatatggaagt |
44870245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 44859086 - 44859147
Alignment:
| Q |
41 |
gtcttcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcct |
102 |
Q |
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| T |
44859086 |
gtcttcccattttttatctacaatctcagtgccctaagaacaactctggattctcatttcct |
44859147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 44833739 - 44833795
Alignment:
| Q |
45 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
101 |
Q |
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| T |
44833739 |
tcccatttttaatctacaaactcagtgccctcaaaacaactctggattcttatttcc |
44833795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 44859247 - 44859301
Alignment:
| Q |
182 |
ttctttatgtttccatgagccgtgtagacacaggacttgatgtgtttatatggaa |
236 |
Q |
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|||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44859247 |
ttctgtatgttagcatgagccgtgtagacacaggactagatgtgtttatatggaa |
44859301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 44846439 - 44846495
Alignment:
| Q |
45 |
tcccaatttttatctacaaactcagtgccctcaaaacaactctggattctcatttcc |
101 |
Q |
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| T |
44846439 |
tcccattttttatctacaaactcagtgccctcggtacaactttggatactcatttcc |
44846495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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