View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_high_3 (Length: 654)
Name: NF18654_high_3
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Complemental strand, 1246341 - 1245710
Alignment:
| Q |
1 |
aaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataatttcttgttctgccagtagaaattgcttcaagcaatgtc |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246341 |
aaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataatttcttgttctgccagtagaaattgcttcaagcaatgtc |
1246242 |
T |
|
| Q |
101 |
tctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagattatatagaataagacaaaaaagaatacaatttttccaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246241 |
tctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagattatatagaataagacaaaaaagaatacaatttttccaaa |
1246142 |
T |
|
| Q |
201 |
tgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246141 |
tgcttattatcatcataatgcttgttgcaaaaagtttatcaaactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacct |
1246042 |
T |
|
| Q |
301 |
gaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246041 |
gaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaat |
1245942 |
T |
|
| Q |
401 |
caacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcnnnnnnncc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1245941 |
caacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcc |
1245844 |
T |
|
| Q |
501 |
taggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatctt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245843 |
taggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatctt |
1245744 |
T |
|
| Q |
601 |
gtaaagccgaggagataaacgtgatgaagacgat |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
1245743 |
gtaaagccgaggagataaacgtgatgaagacgat |
1245710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Complemental strand, 42011002 - 42010365
Alignment:
| Q |
1 |
aaattatcaaattatctttatcttgattttcttaatgtgaaatatatttttaatttgataatttcttgttctgccagtagaaattgcttcaagcaatgtc |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011002 |
aaattatcaaattatctttctcttgattttcttaatgtgaaatatatttttaatttgataatttcttgttctgccagtagaaattgcttcaagcaatgtc |
42010903 |
T |
|
| Q |
101 |
tctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagattatatagaataagacaaaaaagaatacaatttttccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42010902 |
tctccttatctttatcaggaatttaggagtaaagcatcaagaaattatatgaatgatagattatatagaataagacaaaaaagaatacaatttt-ccaaa |
42010804 |
T |
|
| Q |
201 |
tgcttattatcatcataatgcttgttgcaaaaagtttatcagactacaaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42010803 |
tgcttattatcatcataatgcttgttgcaaaaagtttatcaaactataaaacatgaaacctcaaaattcagcaacaataatctactgcaacattcaatct |
42010704 |
T |
|
| Q |
301 |
gaatttgttaccaaactactgatatttcaaaattcatttccctcatactctatgatgaagacaaaaatctgatagcatagaactctactctcacataaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42010703 |
gaatttgttaccaaactactgatatttcaaaaatcatttccctcatactctatgatgaagacaaaaatctgatagcataaaactctactctcacataaat |
42010604 |
T |
|
| Q |
401 |
caacatgctactctcacaaaattagaacaaatttttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagcnnnnnnncc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42010603 |
caacatgctactctcacaaaattagaacaaa--tttcacaaaggagtctcacctggaaggtaagaaggaagtcctctctcaacctgcaagctttttttcc |
42010506 |
T |
|
| Q |
501 |
taggaaaaaggctactaatactaggcattagaattttcttccctttatccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatctt |
600 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010505 |
taggaaaaaagctactaatactaggcaatagaattttcttccctttttccaacttcctcgcctccatgttttgtggaagtgaatgctgcttttgaatctt |
42010406 |
T |
|
| Q |
601 |
gtaaagccgaggagataaacgtgatgaagacgatgatgatg |
641 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010405 |
gtaaagccgaggagataaacgtgatgaagacgatgatgatg |
42010365 |
T |
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