View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18654_high_37 (Length: 236)
Name: NF18654_high_37
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31225082 - 31225301
Alignment:
| Q |
1 |
gacaatgaagtgacaggtgcaacctcgcttggtatttgggctaccagcatttttcttctttggagcatatgaagttcgacttggtcgaacatctcctcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
31225082 |
gacaatgaagtgacaggtgcaacctcgcttggtatttgggcgaccagcatttttcttctttggagcatatgaagttcgacttggtcgaacaactccacct |
31225181 |
T |
|
| Q |
101 |
tttcgatgatcaacttgaccaaaggaacaccaatacaaaatatactctagtatgccatcaacctttttcttggaagtcgttgatggagatcgtcgacgcc |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31225182 |
tttcgatgatcatctggaccaaaggaacaccaatacaaaatatactctagtatgccatcaacctttttcttggaagtcgttgatggagatcgtcgacgcc |
31225281 |
T |
|
| Q |
201 |
ttgcttcgacgtgaaatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31225282 |
ttgcttcgacgtgaaatctt |
31225301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University