View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18654_high_9 (Length: 465)

Name: NF18654_high_9
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18654_high_9
NF18654_high_9
[»] chr6 (2 HSPs)
chr6 (13-449)||(10116754-10117197)
chr6 (27-101)||(32296309-32296383)
[»] chr2 (14 HSPs)
chr2 (321-449)||(410185-410313)
chr2 (321-445)||(821079-821203)
chr2 (320-449)||(974018-974147)
chr2 (321-449)||(965472-965600)
chr2 (343-447)||(982089-982193)
chr2 (321-447)||(1403193-1403319)
chr2 (321-428)||(1399488-1399595)
chr2 (337-438)||(989773-989874)
chr2 (321-440)||(824816-824935)
chr2 (386-439)||(963576-963629)
chr2 (27-78)||(5428609-5428660)
chr2 (31-85)||(37794805-37794859)
chr2 (107-152)||(5428507-5428552)
chr2 (107-151)||(19263638-19263682)
[»] chr3 (4 HSPs)
chr3 (321-449)||(45810493-45810621)
chr3 (384-441)||(49426733-49426790)
chr3 (33-99)||(7299054-7299120)
chr3 (382-439)||(43359748-43359805)
[»] chr7 (7 HSPs)
chr7 (326-449)||(12105209-12105332)
chr7 (327-445)||(1446021-1446139)
chr7 (389-445)||(1459334-1459390)
chr7 (325-439)||(28449797-28449911)
chr7 (27-100)||(25636054-25636127)
chr7 (34-182)||(47363861-47364014)
chr7 (395-439)||(1333502-1333546)
[»] chr5 (3 HSPs)
chr5 (328-439)||(36199053-36199164)
chr5 (27-81)||(22927216-22927270)
chr5 (27-80)||(16341564-16341619)
[»] chr1 (3 HSPs)
chr1 (383-439)||(48675483-48675539)
chr1 (27-84)||(34664741-34664798)
chr1 (27-79)||(32617719-32617771)
[»] chr8 (2 HSPs)
chr8 (27-85)||(23490119-23490177)
chr8 (46-100)||(45191712-45191766)
[»] chr4 (1 HSPs)
chr4 (27-80)||(28146949-28147002)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 10117197 - 10116754
Alignment:
Q  13 aatataattttcaattcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaacagggtttgattt 112  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||    
T  10117197 aatatgattttcaattcatctatctcaattggaaaaatatccggattctgtgtctattgtcatgaacgacattttttgcggccttaacagtgtttgattt 10117098  T
Q  113 ttgtccacaatgtaaaaacggtaatgtcggctacctatatacctctttgtcgtggccttttctc--ggtaacagactgnnnnnnnaa----aaaccttgg 206  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||             |||||||||    
T  10117097 ttgtccacaatgtaaaaacggtaatgtcggctacctata--cctctttgtcgtggccttttctctcggtaacagactgtttttttttttttaaaccttgg 10117000  T
Q  207 atgcatgtcgttgaaaaagaataatgtgattcattgtattctttattttagagaatttcaccctaatttttaatactcttttttaaaaataatgtagatt 306  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10116999 atgcatgtcgttgaaaaagaataatgtgattcattgtattatttattttagagaatttcactttaatttttaatactcttttttaaaaataatgtagatt 10116900  T
Q  307 tatcatcagccctgtgactttcctac---attccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgcc 403  Q
    ||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116899 tatcatcagccctgtgagtttcctacaatattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgcc 10116800  T
Q  404 ctaaccttcaaaatcttgaactttatcaggtttgtttgttaaattt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10116799 ctaaccttcaaaatcttgaactttatcaggtttgtttgttaaattt 10116754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 32296383 - 32296309
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaaca 101  Q
    |||||||||||||||||  ||||||| |  ||| |||||||||||||||||||  |||| |||||||||||||||    
T  32296383 ttcatctatctcaattgaaaaaatattcagattttgtgtctattgtcatgaaccgcattttttgtggccgtaaca 32296309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 321 - 449
Target Start/End: Original strand, 410185 - 410313
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    |||||| |||||||||||||||||||  ||||||||| ||  ||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  410185 tgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagcttcaaaatctt 410284  T
Q  421 gaactttatcaggtttgtttgttaaattt 449  Q
    |||||||||| ||||||||||||||||||    
T  410285 gaactttatcgggtttgtttgttaaattt 410313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 821079 - 821203
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    ||||||||||||||| ||||||||||| |||||||||| |  |||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||    
T  821079 tgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtatgggtgctccaccattgccctaagcttcaaaatctt 821178  T
Q  421 gaactttatcaggtttgtttgttaa 445  Q
    ||||||||||||||||| |||||||    
T  821179 gaactttatcaggtttgcttgttaa 821203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 974147 - 974018
Alignment:
Q  320 gtgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 419  Q
    ||||||||||||| ||| | |||||||||   || ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  974147 gtgactttcctacgttcaacaatttgacttggttagtgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatct 974048  T
Q  420 tgaactttatcaggtttgtttgttaaattt 449  Q
    ||| ||||||||||||||||||||||||||    
T  974047 tgacctttatcaggtttgtttgttaaattt 974018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 965600 - 965472
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    |||||||||||| ||| | |||||||||   ||  |||||  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  965600 tgactttcctacgttcaacaatttgacttggttattgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatctt 965501  T
Q  421 gaactttatcaggtttgtttgttaaattt 449  Q
    |||||||||||||||||||||||||||||    
T  965500 gaactttatcaggtttgtttgttaaattt 965472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 343 - 447
Target Start/End: Complemental strand, 982193 - 982089
Alignment:
Q  343 ttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttgt 442  Q
    ||||||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  982193 ttgactcatttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgt 982094  T
Q  443 taaat 447  Q
    |||||    
T  982093 taaat 982089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 1403193 - 1403319
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||| | || |||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  1403193 tgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatctt 1403292  T
Q  421 gaactttatcaggtttgtttgttaaat 447  Q
    ||  ||||| |||| ||| | ||||||    
T  1403293 gacttttatgaggtatgtgtcttaaat 1403319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 1399488 - 1399595
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    ||||||| ||||||||||||||||||||||| ||||||||  ||||   || |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  1399488 tgacttttctacattccataatttgactcatctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagcttcaaaatctt 1399587  T
Q  421 gaacttta 428  Q
    ||| ||||    
T  1399588 gaatttta 1399595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 989874 - 989773
Alignment:
Q  337 cataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggttt 436  Q
    ||||||||||| || |||| ||||  | || |||||||| | || ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||    
T  989874 cataatttgacccacttggagctctacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcaggttt 989775  T
Q  437 gt 438  Q
    ||    
T  989774 gt 989773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 440
Target Start/End: Original strand, 824816 - 824935
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    |||| ||||||| || ||||||||||| ||  ||| ||||| |||||  | |||| | || | |||| |||||||||| | |||||| ||||| ||||||    
T  824816 tgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcacaactgctccaccacttccctaagcttcagaatctt 824915  T
Q  421 gaactttatcaggtttgttt 440  Q
    |||||||||| |||||||||    
T  824916 gaactttatcgggtttgttt 824935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 963576 - 963629
Alignment:
Q  386 aagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 439  Q
    |||||||| |||| |||||||| ||||||||||| || ||||||||||||||||    
T  963576 aagtgctctaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 963629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 5428660 - 5428609
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaa 78  Q
    |||||||||||||||||  | ||||||| |||| ||||||||||||||||||    
T  5428660 ttcatctatctcaattgaaataatatccaaattttgtgtctattgtcatgaa 5428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 37794805 - 37794859
Alignment:
Q  31 tctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacatt 85  Q
    |||||||||||||  |||||||||  ||||| ||||| |||||||||||||||||    
T  37794805 tctatctcaattgaaaaaatatccagattctatgtcttttgtcatgaacgacatt 37794859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 5428552 - 5428507
Alignment:
Q  107 tgatttttgtccacaatgtaaaaacggtaatgtcggctacctatat 152  Q
    |||||||||| |||  |||||||||||||| |||||||||||||||    
T  5428552 tgatttttgttcactctgtaaaaacggtaacgtcggctacctatat 5428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 19263682 - 19263638
Alignment:
Q  107 tgatttttgtccacaatgtaaaaacggtaatgtcggctacctata 151  Q
    |||||||||| |||| |||||||| ||||| ||||||||||||||    
T  19263682 tgatttttgttcacattgtaaaaatggtaacgtcggctacctata 19263638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 45810621 - 45810493
Alignment:
Q  321 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 420  Q
    |||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |||     
T  45810621 tgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtctc 45810522  T
Q  421 gaactttatcaggtttgtttgttaaattt 449  Q
    || |||||||||||||| |||||||||||    
T  45810521 gacctttatcaggtttgcttgttaaattt 45810493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 441
Target Start/End: Complemental strand, 49426790 - 49426733
Alignment:
Q  384 acaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttg 441  Q
    |||||||||| | ||||||||||||||||||||| |||||||   |||||||||||||    
T  49426790 acaagtgctcaatcattgccctaaccttcaaaatattgaactcagtcaggtttgtttg 49426733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 7299120 - 7299054
Alignment:
Q  33 tatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaa 99  Q
    |||||||||||  |||||||||| ||| ||| |||| ||||||||||| |||| |||| ||||||||    
T  7299120 tatctcaattgaaaaaatatccggattttgtctctagtgtcatgaacggcattttttgcggccgtaa 7299054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 43359748 - 43359805
Alignment:
Q  382 gtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 439  Q
    |||||||||||| | | ||||||||||||||||||| |||| |||  |||||||||||    
T  43359748 gtacaagtgctcaatccttgccctaaccttcaaaatgttgagcttagtcaggtttgtt 43359805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 326 - 449
Target Start/End: Original strand, 12105209 - 12105332
Alignment:
Q  326 ttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaact 425  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||  |  | |||| |||| ||| ||||| |||||||||||||| ||    
T  12105209 ttcctacattccataatttgactcatttggtgctctgctataattgggatatagttccaagaatgctgcacctttgtcctaagcttcaaaatcttgacct 12105308  T
Q  426 ttatcaggtttgtttgttaaattt 449  Q
    || |||||||||||| ||||||||    
T  12105309 ttttcaggtttgtttcttaaattt 12105332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 445
Target Start/End: Complemental strand, 1446139 - 1446021
Alignment:
Q  327 tcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactt 426  Q
    ||||||||||||||||||||||||||||||||||  |||   ||||| |||||||  ||  |||||| ||| ||||||||| ||||||||| ||||| ||    
T  1446139 tcctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaattt 1446040  T
Q  427 tatcaggtttgtttgttaa 445  Q
    |||||||||||||| ||||    
T  1446039 tatcaggtttgtttcttaa 1446021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 1459390 - 1459334
Alignment:
Q  389 tgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttgttaa 445  Q
    |||||||| ||||||| || ||||||| |||||||||||||||||||||||| ||||    
T  1459390 tgctccacgattgccccaagcttcaaactcttgaactttatcaggtttgtttcttaa 1459334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 439
Target Start/End: Complemental strand, 28449911 - 28449797
Alignment:
Q  325 tttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaac 424  Q
    |||||||| ||| | ||||||||||| |||||| ||  |||  ||  ||||||  || || |||||||  ||||||| |||||||||||||| ||||| |    
T  28449911 tttcctaccttcaacaatttgactcacttggtgatcaactactatctggatatgtttataaaagtgctttaccattgtcctaaccttcaaaagcttgagc 28449812  T
Q  425 tttatcaggtttgtt 439  Q
    |||||||||||||||    
T  28449811 tttatcaggtttgtt 28449797  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 25636054 - 25636127
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaac 100  Q
    ||||||||| |||||||  |||||| ||| ||| ||||| ||||||||||||||||||| |||  |||||||||    
T  25636054 ttcatctatttcaattgaaaaaatacccggattatgtgtttattgtcatgaacgacattttttacggccgtaac 25636127  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 47363861 - 47364014
Alignment:
Q  34 atctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgac-attctttgtggccgtaacagggtt------tgatttttgtccacaatgta 126  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||||| | ||| |||| || |||| | | |||      ||||||||||||||  | ||    
T  47363861 atctcaattgaaaaaatatccggattctatgtctattgtcatgaacggcaattttttgcggtcgtatcggtgtttcgtcgtgatttttgtccactttata 47363960  T
Q  127 aaaacggtaatgtcggctacctatatacctctttgtcgtggcc-ttttctcggtaac 182  Q
    |||||||||| ||| ||||||||||   || ||||| |||||| |||||||||||||    
T  47363961 aaaacggtaacgtccgctacctata---ctttttgtggtggcctttttctcggtaac 47364014  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 1333546 - 1333502
Alignment:
Q  395 accattgccctaaccttcaaaatcttgaactttatcaggtttgtt 439  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||    
T  1333546 accattgccctaagcttcaaaggcttgaacttgatcaggtttgtt 1333502  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 439
Target Start/End: Original strand, 36199053 - 36199164
Alignment:
Q  328 cctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaacttt 427  Q
    ||||| ||| ||||||||||||| |||||| ||  |||| ||| ||||||  || || ||||||| ||||| |||||||| ||||||| |||||||||||    
T  36199053 cctaccttcaataatttgactcacttggtgatcaactattatttggatatgtttatagaagtgcttcaccactgccctaaacttcaaattcttgaacttt 36199152  T
Q  428 atcaggtttgtt 439  Q
    | ||||||||||    
T  36199153 accaggtttgtt 36199164  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 22927216 - 22927270
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacga 81  Q
    |||||||||||||||||  |||||||||| ||| | |||||||||||||||||||    
T  22927216 ttcatctatctcaattgaaaaaatatccggattttatgtctattgtcatgaacga 22927270  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 16341564 - 16341619
Alignment:
Q  27 ttcatctatctcaattgggaaaa--tatccgaattctgtgtctattgtcatgaacg 80  Q
    |||||||||||||||||  ||||  |||||| ||||| ||||||||||||||||||    
T  16341564 ttcatctatctcaattgaaaaaaaatatccggattctatgtctattgtcatgaacg 16341619  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 48675539 - 48675483
Alignment:
Q  383 tacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 439  Q
    |||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  48675539 tacaagcgctccaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 48675483  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34664798 - 34664741
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacat 84  Q
    |||||||||||||||||  | ||||||| | |||| ||||||||||||||||||||||    
T  34664798 ttcatctatctcaattgaaacaatatccaatttctatgtctattgtcatgaacgacat 34664741  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 32617719 - 32617771
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaac 79  Q
    |||||||||||||||||  |||||| ||| ||||| |||||||||||||||||    
T  32617719 ttcatctatctcaattgaaaaaatacccggattctatgtctattgtcatgaac 32617771  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 23490119 - 23490177
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacgacatt 85  Q
    |||||||||||||||||  |||||||||| || || |||||||||||||||||| ||||    
T  23490119 ttcatctatctcaattgaaaaaatatccggatgctatgtctattgtcatgaacggcatt 23490177  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 45191712 - 45191766
Alignment:
Q  46 aaaatatccgaattctgtgtctattgtcatgaacgacattctttgtggccgtaac 100  Q
    |||||||| ||||| |||||| |||||||||||||||||| || | |||||||||    
T  45191712 aaaatatctgaattttgtgtccattgtcatgaacgacatttttggcggccgtaac 45191766  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 28147002 - 28146949
Alignment:
Q  27 ttcatctatctcaattgggaaaatatccgaattctgtgtctattgtcatgaacg 80  Q
    |||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  28147002 ttcatctatctcaattgaaaaaatatccagattctatgtctattgtcatgaacg 28146949  T

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