View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_1 (Length: 760)
Name: NF18654_low_1
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 53618654 - 53617909
Alignment:
| Q |
1 |
actagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaacagtctaggaaagctactaaaccatagcat |
100 |
Q |
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| T |
53618654 |
actagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaaaagtctaggaaagctactaaaccatagcat |
53618555 |
T |
|
| Q |
101 |
aaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaaaaactttcgagtttct |
200 |
Q |
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| T |
53618554 |
aaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaaaaactttcgagtttct |
53618455 |
T |
|
| Q |
201 |
tcatcgtgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaaacttggcagcaagcca |
300 |
Q |
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| T |
53618454 |
tcatcatgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaaacttggcagcaagcca |
53618355 |
T |
|
| Q |
301 |
aacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccattaacagtaaaagttaatgtaaaatgaagat |
400 |
Q |
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| T |
53618354 |
aacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccatcaacagtaaaagttaatgtaaaatgaagat |
53618255 |
T |
|
| Q |
401 |
gacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttacttttactgggccccaagttt |
500 |
Q |
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| T |
53618254 |
gacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttacttttactgggccccaagttt |
53618155 |
T |
|
| Q |
501 |
tcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatacttgcgttctaatgtaccttaaagggtcccacagtttaccactattt |
600 |
Q |
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| T |
53618154 |
tcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatatttgcgttctaatgtaccttaaagggtcccacagtttaccactattt |
53618055 |
T |
|
| Q |
601 |
gtcttatgaacatgtcctagtat---agaaactctacttacatattattgacatgacactcaacatcaatgctagaaaaaatcagaaactgtttttagtt |
697 |
Q |
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| T |
53618054 |
gtcttatgaacatgtcctagtatagaagaaactctacttacatattattgacatgacgctcaacatcaatgctagaaaaaatcagaaactgtttttagtt |
53617955 |
T |
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| Q |
698 |
gttcttaattttacaacattgcaatctagatattagcttatataag |
743 |
Q |
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| T |
53617954 |
gttcttaattttacaacattgcaatctagatattagcttatataag |
53617909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 677
Target Start/End: Complemental strand, 14344796 - 14344571
Alignment:
| Q |
454 |
gaacaatgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgttta---ctccaatacaaaaata |
550 |
Q |
| |
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|||||||| || ||||| || ||||||||||| |||||||||||||| || ||| |||||||||||||||||||| |||| ||||||| ||||||| |
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| T |
14344796 |
gaacaatgctttatgttcttgagttacttttagtgggccccaagtttccatgtgttatttaagaacattcacctatttttattactccaatgcaaaaatc |
14344697 |
T |
|
| Q |
551 |
atacttgcgttct-aatgtaccttaaagggtcccacagtttaccactatttgtcttatgaacatgtcctagtatagaaactctacttacatattattgac |
649 |
Q |
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|| ||| ||||| ||| ||| | || |||||||||| | |||||| || || |||||||| || || ||||||||||||||||||||||| | |
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| T |
14344696 |
gtagttgtgttctgaatttacttcaaggggtcccacaactcaccacttttcagtgtaagaacatgtactc--atggaaactctacttacatattattgcc |
14344599 |
T |
|
| Q |
650 |
atgacactcaacatcaatgctagaaaaa |
677 |
Q |
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| T |
14344598 |
atgccactcgacatcaatgctagaaaaa |
14344571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 701
Target Start/End: Original strand, 50422340 - 50422409
Alignment:
| Q |
632 |
tacttacatattattgacatgacactcaacatcaatgctagaaaaaatcagaaactgtttttagttgttc |
701 |
Q |
| |
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|||||||||||||||| |||| ||||||| ||||||||||| |||||| ||||| ||||||||||| |
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| T |
50422340 |
tacttacatattattgccatgctactcaactccaatgctagaacaaatcaaaaactacctttagttgttc |
50422409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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