View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_10 (Length: 453)
Name: NF18654_low_10
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 7109135 - 7108714
Alignment:
| Q |
12 |
ataggcctatagctttagataacttcaagtttaaaattataaccaaagtgattgctgaaaggttagctagaatcatgcctaacctcatttctaatcatca |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
7109135 |
atagacctatagctttagataacttcaagtttaaaattataaccaaagtgattgctgaaaggttagctagaatcatgcctaacctcatttctaagcagca |
7109036 |
T |
|
| Q |
112 |
aagaggatttattcaacaaagacaaatcaaagagtgtatcaacctcacttgagaggcaaccgatcttctccataatagatcttttggaggtaatcttgcc |
211 |
Q |
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| T |
7109035 |
aagagaatttattcaacacagacaaatcaaagagtgcatcaacctcacttgagaggcacccgatcttcgccataatagatcttttggaggtaatcttgcc |
7108936 |
T |
|
| Q |
212 |
cttaaaatagacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaacatttgtaattgga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7108935 |
cttaaaatagacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaacatttggaattgga |
7108836 |
T |
|
| Q |
312 |
tagaggtcattttaaactcatattctctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgaggcaggaatactgtat |
411 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108835 |
tagaggtcattttaaactcatattgtctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgaggcaggaatactgt-- |
7108738 |
T |
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| Q |
412 |
ctatctctcctctccttttatgtttt |
437 |
Q |
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|||||||||||||||||||||||| |
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| T |
7108737 |
--atctctcctctccttttatgtttt |
7108714 |
T |
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