View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18654_low_13 (Length: 410)

Name: NF18654_low_13
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18654_low_13
NF18654_low_13
[»] chr7 (7 HSPs)
chr7 (13-215)||(1288754-1288956)
chr7 (222-394)||(1288122-1288275)
chr7 (20-104)||(1288937-1289021)
chr7 (34-186)||(6897981-6898132)
chr7 (92-204)||(29477817-29477932)
chr7 (83-164)||(4579965-4580047)
chr7 (34-169)||(25831949-25832084)
[»] chr4 (9 HSPs)
chr4 (34-215)||(15020017-15020200)
chr4 (34-215)||(55081250-55081433)
chr4 (34-187)||(16595547-16595700)
chr4 (34-215)||(20513470-20513653)
chr4 (82-203)||(40684423-40684547)
chr4 (83-197)||(39991498-39991613)
chr4 (34-131)||(33722558-33722655)
chr4 (83-131)||(8536705-8536754)
chr4 (83-203)||(2574898-2575021)
[»] chr1 (9 HSPs)
chr1 (38-180)||(2493407-2493549)
chr1 (37-215)||(19309158-19309337)
chr1 (32-215)||(31064317-31064502)
chr1 (34-187)||(23191600-23191753)
chr1 (34-215)||(27761389-27761571)
chr1 (34-169)||(28857659-28857794)
chr1 (104-215)||(12906574-12906688)
chr1 (45-187)||(24159399-24159541)
chr1 (150-215)||(36725187-36725254)
[»] chr6 (9 HSPs)
chr6 (34-215)||(32814619-32814802)
chr6 (34-215)||(14042007-14042190)
chr6 (34-213)||(35129990-35130170)
chr6 (149-215)||(28969592-28969660)
chr6 (34-117)||(5496230-5496312)
chr6 (83-164)||(22610012-22610094)
chr6 (92-189)||(32551077-32551175)
chr6 (84-124)||(8748227-8748267)
chr6 (85-164)||(17914056-17914136)
[»] chr8 (9 HSPs)
chr8 (34-186)||(2470339-2470491)
chr8 (34-215)||(19950182-19950365)
chr8 (34-215)||(19954636-19954819)
chr8 (85-142)||(21416377-21416435)
chr8 (34-109)||(4543950-4544024)
chr8 (149-186)||(34517677-34517714)
chr8 (51-185)||(29793081-29793214)
chr8 (83-123)||(31449476-31449516)
chr8 (84-164)||(43302253-43302336)
[»] chr3 (5 HSPs)
chr3 (35-180)||(4662529-4662674)
chr3 (150-215)||(48435435-48435500)
chr3 (83-164)||(8888373-8888455)
chr3 (89-162)||(35456510-35456584)
chr3 (123-180)||(29067681-29067738)
[»] chr5 (7 HSPs)
chr5 (34-215)||(18265054-18265236)
chr5 (83-124)||(6155022-6155063)
chr5 (84-117)||(1429724-1429757)
chr5 (149-215)||(16747778-16747846)
chr5 (83-124)||(32461156-32461197)
chr5 (92-131)||(13290886-13290926)
chr5 (83-134)||(16639150-16639202)
[»] chr2 (3 HSPs)
chr2 (83-164)||(13291079-13291161)
chr2 (34-117)||(14104954-14105036)
chr2 (92-186)||(41558643-41558738)
[»] scaffold0018 (1 HSPs)
scaffold0018 (35-123)||(171358-171444)
[»] scaffold0555 (1 HSPs)
scaffold0555 (150-214)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (138-214)||(148757-148835)
[»] scaffold0182 (1 HSPs)
scaffold0182 (83-164)||(9450-9532)
[»] scaffold0226 (1 HSPs)
scaffold0226 (86-215)||(5811-5943)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 1288956 - 1288754
Alignment:
Q  13 aagggactatgctcttaagaaggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1288956 aagggactatgctcttaagaaggactatgattttaaaaatactcttatttttaaagggacaaagttttgctgaagggattatgctcttaagaccattatt 1288857  T
Q  113 aattctgaaggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaagggagaagaaatgaatagtttgtcaa 212  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1288856 aattctgaaggacattatatctcgaagggactaagttcttaagaacactctttaaatacgacgggatataaaaagggagaagaaatgaatagtttgtcaa 1288757  T
Q  213 cac 215  Q
    |||    
T  1288756 cac 1288754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 1288275 - 1288122
Alignment:
Q  222 cactaatattgtgtgtataatctacctgatatgggacatagtaatttttcaattcacacaaacacacttggtgttcgaacagagccatctgtccatgacc 321  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||                   |    
T  1288275 cactaatattgtgtgtataatctaccggatatgggacataataatttttcaattcacacaaacacacttggtgttccaac-------------------c 1288195  T
Q  322 gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccct 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288194 gtcgttctatccaatctctgctcaacttctctatctgcccattttctcctccaccacgtataaggataaccct 1288122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 1289021 - 1288937
Alignment:
Q  20 tatgctcttaagaaggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaaga 104  Q
    ||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||| |||||||||||||    
T  1289021 tatgctcttaagaaggactctaattttaaaaatactcttattttcgaagggacaaagttttagcgaagggactatgctcttaaga 1288937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 6898132 - 6897981
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaag-gacattatat 132  Q
    |||||||||| |||| ||||||||||||| | |||| || || |||| ||||||||| |||| ||||||||||||| ||||||| |||| |||||| ||     
T  6898132 ggactatgatcttaagaatactcttatttatgaaggaacgaa-ttttaccgaagggactatgttcttaagaccattcttaattccgaagagacatt-taa 6898035  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaa 186  Q
      |||||||| || |  |||||||||||||||||||| ||| |||||| |||||    
T  6898034 accgaagggactatgaccttaagaacactctttaaattcgaagggacagaaaaa 6897981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 29477932 - 29477817
Alignment:
Q  92 tatgctcttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agg 188  Q
    |||| ||||||||||||| ||||||| ||||| | ||||||    |||||||||| |  |||||||||||||||||||| ||| |||||| ||||  |||    
T  29477932 tatgttcttaagaccattcttaattccgaagggatattataaactgaagggattatgaccttaagaacactctttaaatccgaagggacagaaaaggagg 29477833  T
Q  189 gagaagaaatgaatag 204  Q
    ||||||||| ||||||    
T  29477832 gagaagaaaagaatag 29477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 4579965 - 4580047
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctg-aaggacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    |||||||| ||||||||||| |||||| ||||||||| || ||||||||| |   ||||||||| | ||||||||||||||||    
T  4579965 cgaagggactatgctcttaaaaccattcttaattctgaaatgacattataccgaaaagggattatggtcttaagaacactctt 4580047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 25832084 - 25831949
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatat 132  Q
    |||||||||| |||| ||||||||||||||  ||||||||||  ||| | |||| || |||| | ||||||||||| |||||||  |||| ||||||| |    
T  25832084 ggactatgatcttaagaatactcttattttcgaagggacaaa-atttactgaagtgactatgtttttaagaccattcttaattccaaaggaacattattt 25831986  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaat 169  Q
    ||| || ||  || | || ||||||||||||||||||    
T  25831985 ctcaaatgggctatggtcataagaacactctttaaat 25831949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 15020200 - 15020017
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| ||||||||||||||||||  ||||||||||| |||  ||||||||| |||||||||||||||||  |||||| |||| |||||||||||    
T  15020200 ggactatgatcttaaaaatactcttatttccaaagggacaaaattta-ccgaagggactatgctcttaagaccatccttaattttgaatggacattatat 15020102  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
    ||| |||||| || | ||||||||||| |||| |||| |||||||||| ||||  ||| |||||||| |||||| ||||||||||    
T  15020101 ctcaaagggactatggtcttaagaacattcttgaaatccgacgggacagaaaaagaggaagaagaaaagaatagcttgtcaacac 15020017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 55081433 - 55081250
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaag-gacattatat 132  Q
    |||||||||| |||| ||||||||||||| | ||||||| || |||| ||||||||| |||| ||||||||||||| |||||||||||| ||| |||||     
T  55081433 ggactatgatcttaagaatactcttatttctgaagggacgaa-ttttcccgaagggactatgttcttaagaccattcttaattctgaagagacgttataa 55081335  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      |||||||| || |  |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  55081334 accgaagggactatggccttaagaacactctttaaattcgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 55081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 16595700 - 16595547
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| |||||||||||||||||| | |||||||||| |||| || |||||| |||| ||||||||||||| ||||||||||| ||||||| ||     
T  16595700 ggactatgatcttaaaaatactcttatttctgaagggacaaa-ttttacctaagggactatgttcttaagaccattcttaattctgaagggacattttaa 16595602  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaag 187  Q
      | ||  || || |  |||||||||||||||||||| ||| |||||| ||||||    
T  16595601 accaaatagactatggccttaagaacactctttaaattcgaagggacaaaaaaag 16595547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 20513470 - 20513653
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| |||| ||||||||||||| | ||| ||| || |||| ||||||||| |||| |||||| |||||| ||||||  ||| ||||||| ||     
T  20513470 ggactatgatcttaagaatactcttatttctgaagagacgaa-ttttaccgaagggactatgttcttaaaaccattcttaatttcgaagggacattttaa 20513568  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      ||||||||||| ||| |||||| || ||||||||| |||  ||||| ||||  |||||||||||| |||||| | ||||||||    
T  20513569 accgaagggattatgtttttaagaccattctttaaatccgaaaggacagaaaaagagggagaagaaaagaatagctcgtcaacac 20513653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 40684547 - 40684423
Alignment:
Q  82 ccgaagggattatgctcttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggaca 180  Q
    ||||| ||| |||| ||||||||||||| |||||||| |||| ||||||||   |||| ||| || |  |||||||||||||||||||| ||| ||||||    
T  40684547 ccgaatggactatgttcttaagaccattcttaattctaaagggacattataaaccgaatggactatgaccttaagaacactctttaaatccgaagggaca 40684448  T
Q  181 taaaa--agggagaagaaatgaata 203  Q
     ||||  |||||||||||| |||||    
T  40684447 gaaaaacagggagaagaaaagaata 40684423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 39991613 - 39991498
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacat 181  Q
    ||||| || |||||||||||||||||| ||| ||  ||||| | |||||||| |||| ||| |  | |||||| |||||||||||||| ||| || | ||    
T  39991613 cgaagagactatgctcttaagaccattcttactttcgaagggagattatatcacgaatggactgtggtcttaaaaacactctttaaatccgatggaagat 39991514  T
Q  182 aaaaagggagaagaaa 197  Q
    |||||||||| |||||    
T  39991513 aaaaagggaggagaaa 39991498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 33722655 - 33722558
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattata 131  Q
    ||||| |||| |||| ||||||||||||||  ||| |||||| |||  ||||| ||| |||| ||||||||||||| ||||||| ||| ||||||||||    
T  33722655 ggactttgatcttaagaatactcttattttcgaagcgacaaaattta-ccgaatggactatgttcttaagaccattcttaattccgaagggacattata 33722558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 8536705 - 8536754
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattata 131  Q
    ||||| |||||||||||||| |||||| ||||||||||| ||||||||||    
T  8536705 cgaagagattatgctcttaaaaccattcttaattctgaatggacattata 8536754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 2575021 - 2574898
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacat 181  Q
    |||||||| |||||||||||||||||| ||| || |||| ||||||| | |||  ||| |||||   ||||||||||| ||| | ||| |||||||| |     
T  2575021 cgaagggactatgctcttaagaccattcttagttttgaagggacattgtttcttaaagagattatagtcttaagaacattctctgaatccgacgggatag 2574922  T
Q  182 aaaa--agggagaagaaatgaata 203  Q
    ||||  |||||||||||| |||||    
T  2574921 aaaaagagggagaagaaaagaata 2574898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 2493549 - 2493407
Alignment:
Q  38 tatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcg 136  Q
    |||||| |||| ||||||||||||||  |||||||||| |||  ||||||||| |||||||||||||||||| ||||||| ||| ||||||||| |||||    
T  2493549 tatgatcttaagaatactcttattttcgaagggacaaaattta-ccgaagggactatgctcttaagaccattcttaattccgaagggacattatttctcg 2493451  T
Q  137 aagggattaagttcttaagaacactctttaaatacgacgggaca 180  Q
    |||||| || | |||||| |||| ||||||||| | ||||||||    
T  2493450 aagggactatggtcttaaaaacattctttaaatcctacgggaca 2493407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 19309337 - 19309158
Alignment:
Q  37 ctatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctc 135  Q
    ||||||| |||| |||||||||||||| ||| ||| |||  ||| | ||||||| |||| ||||||||||||||||||||| ||| ||||||||||   |    
T  19309337 ctatgatcttaataatactcttattttaaaatggaaaaa--tttactgaagggactatgttcttaagaccattattaattccgaagggacattataaacc 19309240  T
Q  136 gaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
    |||| || || |  |||||||||||||||||||| ||| ||| || ||||  |||||||||||| |||||| | ||||||||    
T  19309239 gaagagactatgaccttaagaacactctttaaatccgaagggtcagaaaaagagggagaagaaaagaatagctcgtcaacac 19309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 31064317 - 31064502
Alignment:
Q  32 aaggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattat 130  Q
    |||||||||||| |||| |||| ||||||||   ||||||| || |||| ||||||||| |||| ||||||||||||| | ||||| ||||| ||||| |    
T  31064317 aaggactatgatcttaagaatagtcttatttcagaagggactaa-ttttaccgaagggactatgttcttaagaccattctcaattccgaagggacatttt 31064415  T
Q  131 atctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
    |   | ||| || || | ||||||||||||||||||||| ||| |||||||||||  |||||||| ||| |||||||| ||||||||    
T  31064416 aaaccaaagagactatgatcttaagaacactctttaaatccgaagggacataaaaagagggagaataaaagaatagttcgtcaacac 31064502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 23191753 - 23191600
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| |||| ||||||||||||||||||||||||||  ||| |||||| || |||| | || |||| ||| ||||||| ||| ||||||||| |    
T  23191753 ggactatgatcttaagaatactcttatttttaaagggacaaa-atttaccgaagagactatgatattgagactattcttaattccgaagggacattattt 23191655  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaag 187  Q
    || |||||||  | | |||||| || ||||||||||| ||||| |||| ||||||    
T  23191654 cttgaagggaccatggtcttaaaaaaactctttaaatccgacgagacagaaaaag 23191600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 27761571 - 27761389
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatat 132  Q
    |||||||||| |||| || |||||||||||| ||||||| || |||| ||||||||| |||  ||||||||||||| ||| ||||||||| ||||| ||     
T  27761571 ggactatgatcttaagaacactcttatttttgaagggacgaa-ttttaccgaagggactattttcttaagaccattctta-ttctgaagggacattttaa 27761474  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      | |||||| || |  |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  27761473 accaaagggactatggccttaagaacactctttaaattcgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 27761389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 28857794 - 28857659
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| |||| ||||||||||||| | ||||||| || |||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||| ||     
T  28857794 ggactatgatcttaagaatactcttatttctgaagggacgaa-ttttaccgaagggactatgttcttaagaccattcttaattctgaatggacattttaa 28857696  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaat 169  Q
      |||| ||| ||||  || |||||||||| ||||||    
T  28857695 accgaaaggactaagacctgaagaacactcattaaat 28857659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 12906574 - 12906688
Alignment:
Q  104 accattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatga 200  Q
    |||||| ||||||| ||||| ||||||||   |||||||| || |  |||||||||||||||||||| ||| |||||| ||||  |||||||||||| ||    
T  12906574 accattcttaattccgaagggacattataaaccgaagggactatggccttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaaga 12906673  T
Q  201 atagtttgtcaacac 215  Q
    |||| | ||||||||    
T  12906674 atagctcgtcaacac 12906688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 24159541 - 24159399
Alignment:
Q  45 ttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatatctcgaagggat 143  Q
    |||| ||||||||||||| | ||||||| || |||| ||||||||| |||| |||||||||| || ||||||| ||||| ||||| ||   ||||||||     
T  24159541 ttaagaatactcttatttctgaagggacgaa-ttttaccgaagggactatgttcttaagaccgttcttaattccgaagggacattttaaaccgaagggac 24159443  T
Q  144 taagttcttaagaacactctttaaatacgacgggacataaaaag 187  Q
    || |  ||||||||||| ||||||||  || |||||| ||||||    
T  24159442 tatggccttaagaacaccctttaaatctgaagggacagaaaaag 24159399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 36725187 - 36725254
Alignment:
Q  150 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | ||||||||    
T  36725187 cttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaagaatagctcgtcaacac 36725254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 32814802 - 32814619
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatat 132  Q
    |||||||||| |||| ||||  ||||||||  |||||||||| |||  ||||||||| || |||||| |||| ||| ||||||||||||| | ||||| |    
T  32814802 ggactatgatattaagaataaacttattttcgaagggacaaaattta-ccgaagggactaagctcttgagactattcttaattctgaagggaaattattt 32814704  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
    || ||||||| || | |||||||||||||||||||||  ||||||||||||||  ||||||| |||| |||||| | ||||||||    
T  32814703 cttgaagggactatggtcttaagaacactctttaaatttgacgggacataaaaagagggagaggaaaagaatagctcgtcaacac 32814619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 14042007 - 14042190
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    ||||| |||| |||| ||||||||||||||  ||||||||||  ||| ||||||| | |||| ||||||||||||| ||||||  ||| ||||||||||     
T  14042007 ggactttgatcttaagaatactcttattttcgaagggacaaa-atttaccgaaggaactatgttcttaagaccattcttaatttcgaagggacattataa 14042105  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      |||||||| || |  ||| ||||||| |||||||| ||| |||||| ||||  |||||||||||| |||||| | ||||||||    
T  14042106 accgaagggactatggcctttagaacacactttaaatccgaagggacagaaaaagagggagaagaaaagaatagctcgtcaacac 14042190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 35129990 - 35130170
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    ||||| |||| |||| ||||||||||||||  |||| ||||| |||  |||||| || |||| ||||||||||||| ||||||| ||| ||||||||||     
T  35129990 ggactttgatcttaagaatactcttattttcgaagg-acaaaattta-ccgaagagactatgttcttaagaccattcttaattccgaatggacattataa 35130087  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaac 213  Q
      |||||||| || |  |||||||||| ||||||||| ||| |||||| ||||  ||||||| |||| |||||| ||||||||    
T  35130088 accgaagggactatgaccttaagaacattctttaaatccgaagggacagaaaaagagggagaggaaaagaatagattgtcaac 35130170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 28969660 - 28969592
Alignment:
Q  149 tcttaagaacactctttaaatacgacgggacat--aaaaagggagaagaaatgaatagtttgtcaacac 215  Q
    |||||||||||||||| |||| |||||||||||  ||| |||||||||||| |||||| | ||||||||    
T  28969660 tcttaagaacactcttaaaatccgacgggacatgaaaagagggagaagaaaagaatagctcgtcaacac 28969592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 5496230 - 5496312
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattc 117  Q
    |||||||||| |||| |||||||| |||||  |||||| ||| |||  ||||||| | |||||||||||||||||| |||||||    
T  5496230 ggactatgatcttaataatactctaattttcgaagggataaaattta-ccgaaggaactatgctcttaagaccatttttaattc 5496312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 22610012 - 22610094
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaag-gacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    ||||| || ||||||||||| |||||| ||||||| |||| ||||||||| |   ||||||||| | ||||||||||||||||    
T  22610012 cgaagagactatgctcttaaaaccattcttaattccgaagtgacattataccgaaaagggattatggtcttaagaacactctt 22610094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 32551175 - 32551077
Alignment:
Q  92 tatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaaggg 189  Q
    |||| ||||||||| |||||||||| |||  |||||||||| |||||||| | ||   ||||||||||||||| |||||  |||| || ||||||||||    
T  32551175 tatgttcttaagactattattaattttgatcggacattataactcgaaggaactatagtcttaagaacactctataaatctgacgagaaataaaaaggg 32551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 8748227 - 8748267
Alignment:
Q  84 gaagggattatgctcttaagaccattattaattctgaagga 124  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  8748227 gaagggactatgctcttaagaccattattgattgtgaagga 8748267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 17914056 - 17914136
Alignment:
Q  85 aagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    |||||| ||||| |||||||||||| ||||||| ||| ||||||||||||   || ||| || | ||||||||||||||||    
T  17914056 aagggactatgcacttaagaccattcttaattccgaagggacattatatcgaaaatggactatggtcttaagaacactctt 17914136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 2470339 - 2470491
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatat 132  Q
    |||||||||| |||||||||||||||||||| ||||||| || |||| ||||||||  |||| ||||||||||||| ||||||| ||||| ||||| ||     
T  2470339 ggactatgatcttaaaaatactcttatttttgaagggacgaa-ttttaccgaaggggctatgttcttaagaccattcttaattcagaagggacattttaa 2470437  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaa 186  Q
       ||||||| || |  |||||||||||||||||||| ||| |||||| |||||    
T  2470438 actgaagggactatgaccttaagaacactctttaaatccgaagggacagaaaaa 2470491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 19950182 - 19950365
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatat 132  Q
    |||||||||| |||| ||||||||||||| | | |||||||| |||| ||||||||| |||| ||||||||||||| || |||| ||| ||||||| ||     
T  19950182 ggactatgatcttaagaatactcttatttctgatgggacaaa-ttttaccgaagggactatgttcttaagaccattctttattccgaatggacattttaa 19950280  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggac--ataaaaagggagaagaaatgaatagtttgtcaacac 215  Q
      |||||||| || |  |||||||||||||||||||| ||| |||||  | ||| ||||||| |||| |||||| | ||||||||    
T  19950281 accgaagggactatgaccttaagaacactctttaaatccgaagggacggaaaaagagggagaggaaaagaatagctcgtcaacac 19950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 19954636 - 19954819
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg-acattatat 132  Q
    |||||||| | |||| ||||||||||||| | |||||||||| |||| ||||||||| |||| ||||||||||||| || |||| ||||| ||||| ||     
T  19954636 ggactatgctcttaagaatactcttatttctgaagggacaaa-ttttaccgaagggactatgttcttaagaccattctttattccgaagggacattttaa 19954734  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      ||||| || || |  |||||||||||||||||||| ||| |||| | ||||  ||||||| |||| |||||| | ||||||||    
T  19954735 accgaagagactatggccttaagaacactctttaaatccgaagggagagaaaaagagggagaggaaaagaatagctcgtcaacac 19954819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 21416435 - 21416377
Alignment:
Q  85 aagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaaggga 142  Q
    ||||||||||||| ||||||||||| |||||||| || ||||||||| |||||||||||    
T  21416435 aagggattatgctattaagaccattcttaattctcaagggacattatttctcgaaggga 21416377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 4544024 - 4543950
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccatt 109  Q
    |||||||||| |||| |||||| |||||| | ||||||| || |||| ||||||||| |||| |||||||||||||    
T  4544024 ggactatgatcttaagaatacttttatttctgaagggacgaa-ttttaccgaagggactatgttcttaagaccatt 4543950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 34517677 - 34517714
Alignment:
Q  149 tcttaagaacactctttaaatacgacgggacataaaaa 186  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  34517677 tcttaaaaacactctttaaatccgacgggacataaaaa 34517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 29793081 - 29793214
Alignment:
Q  51 atactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagga-cattatatctcgaagggattaagtt 149  Q
    ||||||||| |||| |||||||||| || |  | ||| ||||| |||||||||| |||| ||||||  |||| | |||||||| |||||||||||| | |    
T  29793081 atactcttaattttgaagggacaaaattat--caaagagattaagctcttaagatcattcttaatttcgaagaaacattatatttcgaagggattatggt 29793178  T
Q  150 cttaagaacactctttaaatacgacgggacataaaa 185  Q
    ||||||  | ||| |||||| ||| |||||| ||||    
T  29793179 cttaaggtcgctcattaaattcgaagggacaaaaaa 29793214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 31449516 - 31449476
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaagg 123  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  31449516 cgaagggactatgctcttaagaccattcttaattccgaagg 31449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 43302336 - 43302253
Alignment:
Q  84 gaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggat--taagttcttaagaacactctt 164  Q
    ||||||| ||||||||||||||||||||| |||| ||| ||||| ||||||   |||||||  || | ||||||||||||||||    
T  43302336 gaagggactatgctcttaagaccattattgattccgaatggacaatatatcgacaagggattatatggtcttaagaacactctt 43302253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 4662529 - 4662674
Alignment:
Q  35 gactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaa-ggacattatatc 133  Q
    ||||||||| |||| ||||||||||||||| ||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||| ||||||| ||      
T  4662529 gactatgatcttaagaatactcttattttttaagggacgaa-ttttatcgaagggactatgttcttaagaccattcttaattccgaagggacattttaaa 4662627  T
Q  134 tcgaagggattaagttcttaagaacactctttaaatacgacgggaca 180  Q
     |||||||| || |  |||||||||||||||||||| ||| ||||||    
T  4662628 ccgaagggactatggccttaagaacactctttaaatccgaagggaca 4662674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 48435500 - 48435435
Alignment:
Q  150 cttaagaacactctttaaatacgacgggacataaaaagggagaagaaatgaatagtttgtcaacac 215  Q
    ||||||||||||||||||||  || ||||||||||||| |||| |||| |||||| ||||||||||    
T  48435500 cttaagaacactctttaaatctgaagggacataaaaagagagaggaaaagaatagcttgtcaacac 48435435  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 8888373 - 8888455
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    |||||||| |||||||||||||||||| ||||||| ||| |||||||| | |   |||||| || | ||||||||||||||||    
T  8888373 cgaagggactatgctcttaagaccattcttaattccgaagggacattaaaccgaaaagggactatggtcttaagaacactctt 8888455  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 35456584 - 35456510
Alignment:
Q  89 gattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactc 162  Q
    ||||||||||||||||||||| ||||||| ||| |||||||||| |    ||| |||||| ||||||||||||||    
T  35456584 gattatgctcttaagaccattcttaattccgaagggacattataccgaataggaattaaggtcttaagaacactc 35456510  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 29067738 - 29067681
Alignment:
Q  123 gacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggaca 180  Q
    ||||||||| ||||||| || || | |||||| |||||||||||||| ||||||||||    
T  29067738 gacattataactcgaagtgactatgatcttaaaaacactctttaaattcgacgggaca 29067681  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 18265236 - 18265054
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagga-cattatat 132  Q
    |||||||||| |||| ||||||||||||| | ||||||| || |||| ||||||||| |||| ||||||||||||| ||| ||| |||||| |||| ||     
T  18265236 ggactatgatcttaagaatactcttatttctgaagggacgaa-ttttaccgaagggactatgttcttaagaccattcttatttc-gaaggaacattttaa 18265139  T
Q  133 ctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 215  Q
      |||||||| || |  |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  18265138 accgaagggactagggccttaagaacactctttaaatccgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 18265054  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 6155063 - 6155022
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaagga 124  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  6155063 cgaagggactatgctcttaagaccattattgattctgaagga 6155022  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 1429757 - 1429724
Alignment:
Q  84 gaagggattatgctcttaagaccattattaattc 117  Q
    ||||||| ||||||||||||||||||||||||||    
T  1429757 gaagggactatgctcttaagaccattattaattc 1429724  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 16747846 - 16747778
Alignment:
Q  149 tcttaagaacactctttaaatacgacgggacataaaaa--gggagaagaaatgaatagtttgtcaacac 215  Q
    ||||||||||| | ||||||| ||| || |||||||||  |||||||||||||||||| | ||||||||    
T  16747846 tcttaagaacattttttaaatccgatggaacataaaaaaagggagaagaaatgaatagctcgtcaacac 16747778  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 32461197 - 32461156
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaagga 124  Q
    |||||||| ||||||||||||||||||||| |||| ||||||    
T  32461197 cgaagggactatgctcttaagaccattattgattccgaagga 32461156  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 13290926 - 13290886
Alignment:
Q  92 tatgctcttaagaccattattaattctg-aaggacattata 131  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  13290926 tatgctcttaagaccatttttaattctgaaaggacattata 13290886  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 16639202 - 16639150
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattatatct 134  Q
    |||||||| ||||||||||||| |||| |||||||| || |||||||||||||    
T  16639202 cgaagggactatgctcttaagatcatttttaattctaaagggacattatatct 16639150  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 13291161 - 13291079
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    |||||||||||| |||||||||||||| | ||||| ||| ||||||||||||| ||||||  || | ||||||||||||||||    
T  13291161 cgaagggattatactcttaagaccattgtcaattccgaagggacattatatctagaagggtctatgatcttaagaacactctt 13291079  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 14104954 - 14105036
Alignment:
Q  34 ggactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattc 117  Q
    |||||||||| |||| ||||||||||||| | ||||||| || |||  ||||||||| |||| ||||||||||||| |||||||    
T  14104954 ggactatgatcttaagaatactcttatttctgaagggacgaaattta-ccgaagggactatgttcttaagaccattcttaattc 14105036  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 41558738 - 41558643
Alignment:
Q  92 tatgctcttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaa 186  Q
    ||||||||||||| |||| |||||| |||||| || |||| |||| |||||| || | || || ||||||||||||||| |||||||||| |||||    
T  41558738 tatgctcttaagaacatttttaattttgaagggacgttatttctcaaagggactatggtcatatgaacactctttaaatccgacgggacaaaaaaa 41558643  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 171444 - 171358
Alignment:
Q  35 gactatgattttaaaaatactcttatttttaaagggacaaagttttgccgaagggattatgctcttaagaccattattaattctgaagg 123  Q
    ||||||||| |||||||||||||||||| | ||||||||||  |||  |||||||| || | ||||||||||||| ||||||| |||||    
T  171444 gactatgatcttaaaaatactcttatttctgaagggacaaa--tttatcgaagggactacgttcttaagaccattcttaattccgaagg 171358  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 4756 - 4822
Alignment:
Q  150 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaaca 214  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | |||||||    
T  4756 cttaagaacactctttaaatccgaagggacaaaaaaagagggagaagaaaagaatagctcgtcaaca 4822  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 148835 - 148757
Alignment:
Q  138 agggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaaca 214  Q
    |||||||| | |||||||||||||||| || | |||||||||| ||||  ||| ||| |||| ||||||||||||||||    
T  148835 agggattatggtcttaagaacactcttaaagtccgacgggacagaaaaagaggtagaggaaaagaatagtttgtcaaca 148757  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 9532 - 9450
Alignment:
Q  83 cgaagggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctt 164  Q
    |||||||| |||||||||||||||||| ||||||| ||| |||||||| | |   |||||| || | ||||||||||||||||    
T  9532 cgaagggactatgctcttaagaccattcttaattccgaatggacattaaaccgaaaagggactatggtcttaagaacactctt 9450  T

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Target: scaffold0226 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 5943 - 5811
Alignment:
Q  86 agggattatgctcttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggac--ata 182  Q
    ||||| |||| ||||||||||||| ||||||  ||| ||||||||||   |||||||| || |  ||||| |||||||||||||| ||| |||||  | |    
T  5943 agggactatgttcttaagaccattcttaatttcgaagggacattataaaccgaagggactatggccttaaaaacactctttaaatccgaagggactaaaa 5844  T
Q  183 aaaagggagaagaaatgaatagtttgtcaacac 215  Q
    || |||||||| ||| |||||| | ||||||||    
T  5843 aagagggagaaaaaaagaatagctcgtcaacac 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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