View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_15 (Length: 363)
Name: NF18654_low_15
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 39542913 - 39543245
Alignment:
| Q |
14 |
atcatgcacgtaaatctcactttttccttccaattaaattttagagaataaatgtcattttattgcaatattctttttaaaacctttgtacctttaaaat |
113 |
Q |
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| T |
39542913 |
atcatgcacgtaaatctcactttttccttccaattaaattttagagaataaatgtcattttattgcaatattctttttaaaacctttgtacctttaaaat |
39543012 |
T |
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| Q |
114 |
ctccctttctatattgcaaattataaacaaatgaatttgctgtccaacataagcttaaagatcaagtaacttgaactatatggacgaatttatgcatgcc |
213 |
Q |
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| T |
39543013 |
ctccctttctatattgcaaattataaacaaatgattttgctgtccaacataagcttaaagatcaagtaacttgaactatatggacgaatttatgcatgcc |
39543112 |
T |
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| Q |
214 |
aatatgtgttttctttcaaattgtgaggtagcaagattcaacaattttaaacagtttaaggatgccaactaacaaattctttaggtatgttaatcataac |
313 |
Q |
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| T |
39543113 |
aatatgtgttttctttcaaattgtgaggtagcaagattcaacaattttaaacagtttaaggatgccaactaacaaattctttaggtatgttaatcataag |
39543212 |
T |
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| Q |
314 |
tggagttggaaagttcttaaaagaggttacaac |
346 |
Q |
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| T |
39543213 |
tggagttggaaagttcttaaaagaggttacaac |
39543245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 3642496 - 3642584
Alignment:
| Q |
98 |
tttgtacctttaaaatctcccttt-ctatattgcaaattataaacaaatgaatttgctgtccaacataagcttaaagatcaagtaactt |
185 |
Q |
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| T |
3642496 |
tttgtaccttaaaaatctcatttttctatattgcaattgataaacaaatgattgtgctgtccaaaataagctaaaagatcaagtaactt |
3642584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 3642597 - 3642654
Alignment:
| Q |
217 |
atgtgttttctttcaaattgtgaggtagcaagattcaacaattttaaacagtttaagg |
274 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
3642597 |
atgtgttttctttcaaatagtgaggtagcaagattcaacaattttctacggtttaagg |
3642654 |
T |
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