View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18654_low_16 (Length: 350)
Name: NF18654_low_16
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 2674648 - 2674327
Alignment:
| Q |
20 |
cctgaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2674648 |
cctgaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagttt |
2674549 |
T |
|
| Q |
120 |
attttctggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
2674548 |
attttctggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcattggttgttaatgtacttca |
2674449 |
T |
|
| Q |
220 |
acattatagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2674448 |
acattatagctttgcttacatgggagagtacttgactaagagggttagagaaaggatgttttccaagatactcacttttgaagttggttggtttgatgaa |
2674349 |
T |
|
| Q |
320 |
gatcaaaattccacaggttctg |
341 |
Q |
| |
|
|||| |||||| |||||||||| |
|
|
| T |
2674348 |
gatcgaaattctacaggttctg |
2674327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 2642805 - 2642494
Alignment:
| Q |
26 |
tggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||| ||||||| ||| |||||||||||||| |
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|
| T |
2642805 |
tggaagcaagcatgtttgggttgtataaatgcggttttattcggtgcgattcgacctgtatattcgttcgcaatggggtcagttatatcagtttattttt |
2642706 |
T |
|
| Q |
126 |
tggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
225 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2642705 |
tggaagaccatgatgagatcaagaggcaaattaggatctatgcattttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
2642606 |
T |
|
| Q |
226 |
tagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaagatcaa |
325 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2642605 |
tagctttgcttacatgggagaatacttgactaagagggttagagaacgaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaa |
2642506 |
T |
|
| Q |
326 |
aattccacaggt |
337 |
Q |
| |
|
||||| |||||| |
|
|
| T |
2642505 |
aattctacaggt |
2642494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 2590285 - 2590600
Alignment:
| Q |
26 |
tggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttc |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
2590285 |
tggaagcaaacatgtttgggttgtataaatgcggttttatttggtgcaattcaacctgtgtattcttttggattggggtcggttatatcggtttattttt |
2590384 |
T |
|
| Q |
126 |
tggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
225 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2590385 |
tggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtacttcaacatta |
2590484 |
T |
|
| Q |
226 |
tagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaagatcaa |
325 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2590485 |
tagctttgcttacatgggagaatacttgactaagagggttagagaacgaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaa |
2590584 |
T |
|
| Q |
326 |
aattccacaggttctg |
341 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2590585 |
aattctacaggttctg |
2590600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 2571154 - 2570839
Alignment:
| Q |
26 |
tggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttc |
125 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2571154 |
tggaagcaagcatgtttgggttgttttaatgcggttttattcggtgcgattcaacctgtgtattcgtttgcaatggggtcggttatatcagtttatttta |
2571055 |
T |
|
| Q |
126 |
tggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
225 |
Q |
| |
|
| |||||||| |||||||| ||||| ||||||||||| |||| ||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
2571054 |
ttgaggaccacgatgagatcaagaaacaaattaggatttatggtttttgttttctagggctggctgttatttcaatggttattaatatgcttcaacatta |
2570955 |
T |
|
| Q |
226 |
tagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaagatcaa |
325 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2570954 |
tagctttgcttacatgggagagtatttgactaagagggttagagaaaaaatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaa |
2570855 |
T |
|
| Q |
326 |
aattccacaggttctg |
341 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2570854 |
aattctacaggttctg |
2570839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 2621840 - 2622155
Alignment:
| Q |
26 |
tggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttc |
125 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||| | ||| |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
2621840 |
tggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattcaacctgtgttttcatttggattggggtcggttatatcggtttattttt |
2621939 |
T |
|
| Q |
126 |
tggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
225 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621940 |
tggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
2622039 |
T |
|
| Q |
226 |
tagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaagatcaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2622040 |
tagctttgcttacatgggagagtacttgactaagaggattagagaaaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaa |
2622139 |
T |
|
| Q |
326 |
aattccacaggttctg |
341 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2622140 |
aattctacaggttctg |
2622155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 2436425 - 2436732
Alignment:
| Q |
23 |
gaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttatt |
122 |
Q |
| |
|
||||||||||||| ||||||||| ||| | | | |||||||||||||||| |||||||| ||| | |||||| |||| | |||| ||| ||||||| |
|
|
| T |
2436425 |
gaatggaagcaagtatgtttggggtgtttgagttcagttttattcggtgcggttcaacctatatccacatttgcaacgggggcagttgcatcggtttatt |
2436524 |
T |
|
| Q |
123 |
ttctggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaaca |
222 |
Q |
| |
|
||||| | |||| ||||||||| |||||||| |||||||| |||| ||||||||||||||||||||| | ||| || ||| | ||| ||||| |||| |
|
|
| T |
2436525 |
ttctgaatgaccgtgatgagatgaagaagcagattaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaaca |
2436624 |
T |
|
| Q |
223 |
ttatagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaagat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2436625 |
gtatagctttgcttacatgggagagtacttgactaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggat |
2436724 |
T |
|
| Q |
323 |
caaaattc |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
2436725 |
caaaattc |
2436732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 337
Target Start/End: Original strand, 2449628 - 2449942
Alignment:
| Q |
23 |
gaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttatt |
122 |
Q |
| |
|
|||||||||||||| |||||||| | | | ||||| ||||||| ||||| || |||| | | ||| |||||| ||||||| | | || ||||||| |
|
|
| T |
2449628 |
gaatggaagcaagcgtgtttgggatttttgaatgcggttttatctggtgcggttgaaccgatgttttcatttgcaatggggtcaactatttctgtttatt |
2449727 |
T |
|
| Q |
123 |
ttctggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatc-tcaatggttgttaatgtgcttcaac |
221 |
Q |
| |
|
|||| | ||||||||||||| |||||||| |||||||| ||| || |||||||||||||||| || ||||| ||||||||| ||||||||||||| | |
|
|
| T |
2449728 |
ttcttaacaaccatgatgagatcaagaagcagattaggatttatatgctttgttttctagggttagcc-ttatcctcaatggtttttaatgtgcttcagc |
2449826 |
T |
|
| Q |
222 |
attatagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaaga |
321 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2449827 |
attattgttttgcatacatgggagagtacttaactaagagggttagagaaagagtgttttccaagatactcacttttgaagttggttggtttgatgaaga |
2449926 |
T |
|
| Q |
322 |
tcaaaattccacaggt |
337 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
2449927 |
tcaaaattctacaggt |
2449942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 17871714 - 17871620
Alignment:
| Q |
218 |
caacattatagctttgcttacatgggagagtacttgactaagagggttagagaaagaatgttttccaagatactcacttttgaagttggttggtt |
312 |
Q |
| |
|
|||||||||| ||| |||||||||||||| || |||||||| | || ||||| || |||||||| || || ||||| ||||||||||| ||||| |
|
|
| T |
17871714 |
caacattataacttcgcttacatgggagaatatttgactaaacgtgtgagagagagcatgttttctaaaatgctcacgtttgaagttgggtggtt |
17871620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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