View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_17 (Length: 344)
Name: NF18654_low_17
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 21835959 - 21835829
Alignment:
| Q |
17 |
gatacatttcatcaaattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaatgaggttaataaaatttgccactcaacaaa |
116 |
Q |
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|||||| ||||||| |||| |||||||| ||| ||||||| ||||||| ||| ||| |||| |||||||||||||||||||| |||||||| |||||| | |
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| T |
21835959 |
gatacaattcatcacattcgttagcaaacaaagcataggtaacctcagcaattagaataaagagtaacaatgaggttaataagatttgccaatcaacata |
21835860 |
T |
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| Q |
117 |
tccttttggaaaactacacattaatccaaca |
147 |
Q |
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| T |
21835859 |
tgattttggaaaactacacattaatccaaca |
21835829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 21835743 - 21835696
Alignment:
| Q |
219 |
ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaacca |
266 |
Q |
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| T |
21835743 |
ctatttctttaattccaaacttgcttaaatttctttgaactgcaacca |
21835696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 392285 - 392352
Alignment:
| Q |
31 |
aattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaatgaggttaataa |
98 |
Q |
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| T |
392285 |
aatttattagcaaataaagcaaaggtgacctcagaaatcagattgaacagtaacaatgaggttaataa |
392352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 10580499 - 10580453
Alignment:
| Q |
252 |
tttgaactgcaaccaccttcattggatctccagtaacctgtaggcat |
298 |
Q |
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| T |
10580499 |
tttgaactgcaaccaccttcattggatctccagtaacctgtaggcat |
10580453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 6414336 - 6414440
Alignment:
| Q |
73 |
ttaaacagtaacaatgaggttaataaaatttgccactcaacaaatccttttggaaaactacacattaatccaacaaaacaaacttcttgcaccaacaatt |
172 |
Q |
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|||| |||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||||||| | ||| || |||||| |||| | || |||| |
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| T |
6414336 |
ttaatcagtaacaattaggttaataaagttttccggtcaacaaatcattttggaaaactacacattaatacgacagaataaactttttgcgcaaaaaatt |
6414435 |
T |
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| Q |
173 |
ataac |
177 |
Q |
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||||| |
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| T |
6414436 |
ataac |
6414440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 392382 - 392425
Alignment:
| Q |
164 |
ccaacaattataacgaaataaaggaaattcttaggcactcagtt |
207 |
Q |
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| T |
392382 |
ccaacaataataacaaaataaaggaaattcttaggcactcagtt |
392425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 392351 - 392388
Alignment:
| Q |
111 |
aacaaatccttttggaaaactacacattaatccaacaa |
148 |
Q |
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||||||||||||||||||||||||||| | |||||||| |
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| T |
392351 |
aacaaatccttttggaaaactacacatcattccaacaa |
392388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 6590612 - 6590575
Alignment:
| Q |
19 |
tacatttcatcaaattcattagcaaataaaccataggt |
56 |
Q |
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||||||||||||||||||||||||||| || ||||||| |
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| T |
6590612 |
tacatttcatcaaattcattagcaaattaaacataggt |
6590575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 36768862 - 36768788
Alignment:
| Q |
219 |
ctatttcttcaattccaaacctgcgaaaatttctttgaactgcaaccaccttcattggatctccagtaacctgta |
293 |
Q |
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||||||||| |||||||||| ||| |||||||| || |||||||||| |||| ||| |||||||||||||||| |
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| T |
36768862 |
ctatttctttaattccaaacttgccgaaatttctctggactgcaaccatcttccctgggtctccagtaacctgta |
36768788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 37046587 - 37046524
Alignment:
| Q |
22 |
atttcatcaaattcattagcaaataaaccataggtgacctcagaaatcagattaaacagtaacaa |
86 |
Q |
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|||||||||||||||||||||||| || ||||||| ||| ||| | ||||| ||||||||||||| |
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| T |
37046587 |
atttcatcaaattcattagcaaattaaacataggtaacc-cagcagtcagaataaacagtaacaa |
37046524 |
T |
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