View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18654_low_2 (Length: 664)

Name: NF18654_low_2
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18654_low_2
NF18654_low_2
[»] chr7 (1 HSPs)
chr7 (13-634)||(32701573-32702204)


Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 634
Target Start/End: Original strand, 32701573 - 32702204
Alignment:
Q  13 cctgtgttgtgattgtgtgttgagaacaaataacatgtgctgttatatggttgttgcttgttggggtaagcttatacccaagtcaataaaatttgcagca 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  32701573 cctgtgttgtgattgtgtgttgggaacaaataacatgtgctgttgtatggttgttgcttgttggggtaagcttatacacagctcaataaaatttgcagca 32701672  T
Q  113 taaaattgctaaatgagtaaatgaaatgaaat-----aaaccagctcaattattggcagtgccagaaagaaagatttagaaatcaactatcacacttcac 207  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32701673 taaaattgctaaatgagtaaatgaaatgaaatgaaataaaccagctcaattattggcagtgccagaaagaaagatttagaaatcaactatcacacatcac 32701772  T
Q  208 gcctgctttgtagtaatgtactctactctaggacatgacagctgaaattgaactgcat--------ctctagttgtaaccagttgttttgggaatttata 299  Q
    ||||||||||||| ||||||||||| |        |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  32701773 gcctgctttgtagcaatgtactctagt--------tgacagctgaaattgaactgcatttcttcatctctagttgtaaccagttgttttgggaatttata 32701864  T
Q  300 agtataatttttattttattttctcacatagatacatccattaaacactttgaaaaaattaaatagaaatactaatgtaataatagatttgattagtaga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32701865 agtataatttttattttattttctcacatagatacatccattaaacactttgaaaaaattaaatagaaacactaatgtaataatagatttgattagtaga 32701964  T
Q  400 gactgtggtcctctgatctttaggttctatctcatcaaaattaatttatttgtacaatattttctcttatcaaaatacattaatatcatcgatgtcatca 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32701965 gactgtggtcctctgatctttaggttctatctcatcaaaattaatttatttgtacaatattttctcttatcaaaatacattaatatcatcgatgtcatcg 32702064  T
Q  500 aaacttaatatcatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactggatttcccaatcttccactattgttattgt 599  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702065 aaacttaataccatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactggatttcccaatcttccactattgttattgt 32702164  T
Q  600 ttgc-----ttcaattcaattcggattcgtattcctgctt 634  Q
    ||||     |||||||||||||||||||||||||||||||    
T  32702165 ttgcttcaattcaattcaattcggattcgtattcctgctt 32702204  T

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