View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_21 (Length: 309)
Name: NF18654_low_21
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 39542398 - 39542702
Alignment:
| Q |
5 |
gagagatgaaggatcaaattaaagttcttacacatgcataaacgagttaatnnnnnnnngaaggaagaaaacagttcaatttatgatgtttaatcaaatg |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39542398 |
gagaaatgaaggatcaaattaaagttcttacacatgcataaacgagttaataaaataaagaagggagaaaacagttcaatttatgatgtttaatcaaatg |
39542497 |
T |
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| Q |
105 |
aatgttggagtactacctccaaaattatgtataaccaaatataagcccaaaatgaccaaaatagctctactatccatactcctagatctgcaatcttttt |
204 |
Q |
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| T |
39542498 |
aatgttgaagtactacctccaaaattatgtataaccaaatataagcccaaaatgaccaaaatagctctactatccatactcctagatctgcaatcttttt |
39542597 |
T |
|
| Q |
205 |
caactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaacgcagcagaaccaacgagtgttccaggtcccaaacctaaatat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39542598 |
caactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaacgcagcagaaccaacgagtgttccaggtcccaaacctaaatat |
39542697 |
T |
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| Q |
305 |
taagc |
309 |
Q |
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||||| |
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| T |
39542698 |
taagc |
39542702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 43118307 - 43118393
Alignment:
| Q |
176 |
atccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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| T |
43118307 |
atccatactcctagatcaacaatctttttcaacttttctgattttaaaattactacacaaataacatggatggggaagagatcaaac |
43118393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 15594815 - 15594901
Alignment:
| Q |
176 |
atccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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| T |
15594815 |
atccatactcctagatctataatctttttcaactcttctgattttgaaattactacacaaataacatggatggggaagagatcaaac |
15594901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 46200125 - 46200211
Alignment:
| Q |
176 |
atccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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| T |
46200125 |
atccatactcctagatcaacaatctttttcaacttttctgattttgaaattactacacaaataacatggatggggaagagatcaaac |
46200211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15594700 - 15594745
Alignment:
| Q |
10 |
atgaaggatcaaattaaagttcttacacatgcataaacgagttaat |
55 |
Q |
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| T |
15594700 |
atgaaggttcaaattatagttcttacacatccataaatgagttaat |
15594745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 35829293 - 35829207
Alignment:
| Q |
176 |
atccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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| T |
35829293 |
atccatactcctagatcaacaatctttttcaacttttctgattttgaaattactacacaaataaaatggatggggaagagatcaaac |
35829207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 29343537 - 29343445
Alignment:
| Q |
170 |
tctactatccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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| T |
29343537 |
tctacaatccagactcctagatcaacaatctttttcaacttttctaattttgaaattactacacaaataacatggatggggaagagatcaaac |
29343445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 29343646 - 29343601
Alignment:
| Q |
10 |
atgaaggatcaaattaaagttcttacacatgcataaacgagttaat |
55 |
Q |
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| T |
29343646 |
atgaaggttcaaattatagttcttacacatccataaatgagttaat |
29343601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 13353131 - 13353216
Alignment:
| Q |
176 |
atccatactcctagatctgcaatctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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||||||||||||| ||| ||||||||| ||||||| ||| ||||| |||||| ||||||| | | ||||||||||||||||||||| |
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| T |
13353131 |
atccatactcctaaatcaacaatctttt-caactcttctgattttgaaattactacacaaataacatggatggggaagagatcaaac |
13353216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 17227997 - 17228062
Alignment:
| Q |
197 |
atctttttcaactctcctgcttttggaattaccacacaaacagcgtggatggggaagagatcaaac |
262 |
Q |
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||||||||||||| | || ||||| |||||| ||||||| | | ||||||||||||||||||||| |
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| T |
17227997 |
atctttttcaacttttctaattttgaaattactacacaaataacatggatggggaagagatcaaac |
17228062 |
T |
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