View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_25 (Length: 285)
Name: NF18654_low_25
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 1247456 - 1247714
Alignment:
| Q |
8 |
caacagagacagagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcacc |
107 |
Q |
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| T |
1247456 |
caacagagaaagagaagaacccttaacattcacaatcccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcact |
1247555 |
T |
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| Q |
108 |
gatccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgac |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
1247556 |
gacccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgctgatgttgagtttggattctcaagacctgattttcggc |
1247655 |
T |
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| Q |
208 |
aaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataag |
266 |
Q |
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| T |
1247656 |
aaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctatgttataag |
1247714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 42014228 - 42014486
Alignment:
| Q |
8 |
caacagagacagagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcacc |
107 |
Q |
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||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42014228 |
caacagagaaagagaagaatctttaacattcacaatcccatcatcttcctctcattcctcaccgatcaccgtctctgacacactcgatagttacctcacc |
42014327 |
T |
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| Q |
108 |
gatccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgac |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
42014328 |
gacccaagaagcgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgccgatgttgagtttggattctcaagacctgattttcgac |
42014427 |
T |
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| Q |
208 |
aaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataag |
266 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42014428 |
aaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctttgttataag |
42014486 |
T |
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