View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_27 (Length: 281)
Name: NF18654_low_27
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_27 |
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| [»] scaffold0430 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 21749263 - 21749518
Alignment:
| Q |
12 |
tatgttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggat |
111 |
Q |
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| T |
21749263 |
tatgttagatttcacaagattaggattttggaatttttgtattggaactggatagtttgataggttaatagacaaacaatgaattaaataatgtatggat |
21749362 |
T |
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| Q |
112 |
gttttgtattgtattgtttgtcaaccgagattcttttaattaattctttatgcacttgagttattttaaactgttggttatgctgaaaactgaatgatac |
211 |
Q |
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| T |
21749363 |
gttttgtattgtattgtttgtcaaccgagattcttttgattaattctttatgcacttgagttattttaaactgttggctatgctgaaaactgaatgatac |
21749462 |
T |
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| Q |
212 |
ttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctatt |
267 |
Q |
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| T |
21749463 |
ttgattaatttttctttccatatgacacatgagaatatgctggatgtagatctatt |
21749518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 11141 - 10871
Alignment:
| Q |
15 |
gttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgtt |
114 |
Q |
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| T |
11141 |
gttagatttcacaagatcaggctgttggattttttgtattggaactgtatagtttgacaggttaatagacaaacaatgaattacataatgtctggatgta |
11042 |
T |
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| Q |
115 |
ttgtattgtattgtttgtcaaccgagattcttttaatt-------aattctttatgcac-----------ttgagttattttaaactgttggttatgctg |
196 |
Q |
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| T |
11041 |
ttctattgtattgtttgtcaactgatattctcttgattttaagtggattttatatgcactttagtatcctttgagttattttaaactgttggctatgctg |
10942 |
T |
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| Q |
197 |
aaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctatt |
267 |
Q |
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| T |
10941 |
gaaattgaatgatacttgattcgtttttcattccatacgacacatgaaaatattctagaggtagatctatt |
10871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 15584 - 15690
Alignment:
| Q |
161 |
atgcacttgagttattttaaactgttggttatgctgaaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtag |
260 |
Q |
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| T |
15584 |
atgcacttgagttattttaaactgttggctatgctgaaaattgaatgatacttgattaatttttctttccatatgacacatgagaatatgctcggggtag |
15683 |
T |
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| Q |
261 |
atctatt |
267 |
Q |
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| T |
15684 |
atctatt |
15690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 3315397 - 3315665
Alignment:
| Q |
15 |
gttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgtt |
114 |
Q |
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| T |
3315397 |
gttagatttcacaagattaggctgttggaatttttgtattggaactggatagtttgacaggttaatagacaaacaatgaattacataatatccgga---- |
3315492 |
T |
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| Q |
115 |
ttgtattgtattgtttgtcaaccgagattctttt--------aattaattctttatgcac-------------ttgagttattttaaactgttggttatg |
193 |
Q |
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||||||||||||||||||||| |||||||||| | | ||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
3315493 |
-tgtattgtattgtttgtcaacttagattctttttgattttaagtggattctatatgcactttagtatcctttttgagttattttaaactgttggctatg |
3315591 |
T |
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| Q |
194 |
ctgaaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctatt |
267 |
Q |
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||| ||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
3315592 |
ctggaaatagaatgatacttgattaatttttcattccatacgacacaggagaatatgctcgaggtagatctatt |
3315665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 27354990 - 27354866
Alignment:
| Q |
24 |
cacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgttttgtattgt |
123 |
Q |
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|||||||||||| | ||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
27354990 |
cacaagattaggctgttgaaatttttgtattggaactggatagtttgacaggttaatagacaaacaatgaattaaataatgtttgagtgttttgtattgt |
27354891 |
T |
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| Q |
124 |
attgtttgtcaaccgagattctttt |
148 |
Q |
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| T |
27354890 |
attgtttgtcaactgagattctttt |
27354866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 27354824 - 27354776
Alignment:
| Q |
219 |
atttttctttccatatgacacatgagaatatgctggaggtagatctatt |
267 |
Q |
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| T |
27354824 |
atttttcattccatacgacacatgagaatatgctggaggtagatctatt |
27354776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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