View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_28 (Length: 260)
Name: NF18654_low_28
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34819684 - 34819922
Alignment:
| Q |
1 |
caagaaacactagcatcatgaaacatattggagtgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccagcac |
100 |
Q |
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| T |
34819684 |
caagaaacactagcatcatgaaacatattggagtgattagacttccttgttgcctcaaaatcttcataaaggttgaaatgatccttcacgaagccagcac |
34819783 |
T |
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| Q |
101 |
gatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataactcttccctttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
34819784 |
gatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatcactcttccctttctt |
34819883 |
T |
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| Q |
201 |
ctttaaaggacatgcctcagcgagttgatggtcaatctt |
239 |
Q |
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| T |
34819884 |
ctttaaaggacatgcctcaacgagttgatggtcaatctt |
34819922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 34820119 - 34820194
Alignment:
| Q |
160 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaa |
235 |
Q |
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| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaa |
34820194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 22080680 - 22080743
Alignment:
| Q |
34 |
tgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccag |
97 |
Q |
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| T |
22080680 |
tgattagacttcctcgctgcctcaaaatcctcaggaaggttgaaatgatctttcacgaagccag |
22080743 |
T |
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