View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18654_low_29 (Length: 255)

Name: NF18654_low_29
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18654_low_29
NF18654_low_29
[»] chr7 (2 HSPs)
chr7 (20-255)||(7109679-7109919)
chr7 (92-198)||(7110772-7110878)
[»] chr1 (4 HSPs)
chr1 (100-210)||(9987640-9987749)
chr1 (92-170)||(9986483-9986561)
chr1 (98-180)||(9992710-9992790)
chr1 (109-192)||(9991728-9991811)
[»] chr2 (2 HSPs)
chr2 (27-75)||(26169914-26169962)
chr2 (100-187)||(29873561-29873648)
[»] chr4 (1 HSPs)
chr4 (100-187)||(15841390-15841477)
[»] chr8 (1 HSPs)
chr8 (139-187)||(16524451-16524499)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 7109919 - 7109679
Alignment:
Q  20 ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||||||||||| |||||    
T  7109919 ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagac 7109820  T
Q  120 gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcc-----ttgat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  7109819 gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgat 7109720  T
Q  215 tttgttgattggaaggaggctaatcaacttatccatcttcc 255  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7109719 tttgttgattggaaggaggctaatcaacttatccatcttcc 7109679  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
Q  92 tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga 191  Q
    ||||| || |||| |||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  7110772 tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga 7110871  T
Q  192 accaaat 198  Q
    |||||||    
T  7110872 accaaat 7110878  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
Q  100 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata 199  Q
    ||||| ||||||||  |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| |||||     
T  9987749 gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg 9987651  T
Q  200 tggatgatcct 210  Q
    |||| ||||||    
T  9987650 tggacgatcct 9987640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
Q  92 tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc 170  Q
    ||||| || |||| |||||||||||  |||||||||||||||||||||||| |||||| | |||||| |||||||||||    
T  9986561 tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc 9986483  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
Q  98 tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt 180  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||| ||| |||| || | |||||||||| ||||||||||    
T  9992790 tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt 9992710  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
Q  109 ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa 192  Q
    ||||| ||||||| || ||| || |||||||||| |||||| ||||||||||||||| || ||||   ||||||||||||||||    
T  9991811 ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa 9991728  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
Q  27 ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc 75  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||    
T  26169914 ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc 26169962  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
Q  100 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 187  Q
    ||||| ||||||| || || |||| |||||| |||| | |||||||||||||| | | ||||| |||||||| || ||||||||||||    
T  29873648 gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct 29873561  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
Q  100 gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 187  Q
    ||||| ||| ||| ||||| || | ||||||||||| | ||||||||||| || | | |||||||||||||| || ||||||||||||    
T  15841477 gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct 15841390  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
Q  139 ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct 187  Q
    |||||||||||||| | | |||| |||||||||||| ||||||||||||    
T  16524451 ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct 16524499  T

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