View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_35 (Length: 242)
Name: NF18654_low_35
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15798899 - 15799122
Alignment:
| Q |
1 |
cccgtttactttctaacaatatcgtcaatgacattggttatgcattttcctttttaatcgtgatagacaaaatatgaaagataactagactcaatgcatt |
100 |
Q |
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| T |
15798899 |
cccgtttactttctaacaatattttcaatgacattggttatgcattttcctttttaatcgtgatagacaaaatatgaaagataactagactcaatgcatt |
15798998 |
T |
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| Q |
101 |
ttcgaaaagacagaacaatcttttgaaattcttcagaattttcaaaagtatttactctatgtttaaattgcattttcaaaaacatccataaaatcttctc |
200 |
Q |
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| T |
15798999 |
ttcgaaaagacagaacaatcttttgaaattcttcagaattttcaaaagtatttactctatgtttaaattgcattttcaaaaacatccataaaatcttctc |
15799098 |
T |
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| Q |
201 |
tgatgtgtattttatgcaggtgat |
224 |
Q |
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| T |
15799099 |
tgatgtgtattttatgcaggtgat |
15799122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 20218905 - 20218966
Alignment:
| Q |
121 |
ttttgaaattcttcagaattttcaaaagtatttactctatgtttaaattgcattttcaaaaa |
182 |
Q |
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|||||||||| |||||||||||||||| |||| | ||||| || ||| ||||||||| |||| |
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| T |
20218905 |
ttttgaaatttttcagaattttcaaaaatattcaatctattttcaaaatgcattttccaaaa |
20218966 |
T |
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