View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_6 (Length: 611)
Name: NF18654_low_6
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 16 - 592
Target Start/End: Original strand, 3491208 - 3491784
Alignment:
| Q |
16 |
atagtccaagtaagcttaaactcaatggaggaaaagtgttgaaggaaaatgctactgatggtgatgaaactgttgctataactggtcttgagaaaattgt |
115 |
Q |
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| T |
3491208 |
atagtccaagtaagcttaaactcaatggaggaaaagtgttgaaggaaaatgctactgatggtgatgaaactgttgctataactggtcttgagaaaattgt |
3491307 |
T |
|
| Q |
116 |
tttgagacatcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagaaaactggttgaacctcagaagggt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3491308 |
tttgagacatcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagtaaactggttgaacctcagaagggt |
3491407 |
T |
|
| Q |
216 |
aaggtgaaagctttggttggtgcatttgaaactttaatttctctcaacgagnnnnnnncttgagaaaatgctctcaattgatgtatcggtagacattttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3491408 |
aaggtgaaagctttggttggtgcatttgaaactttaatttctctcaacgagaaaaaaacttgagaaaatgctctcaattgatgtatcggtagacattttc |
3491507 |
T |
|
| Q |
316 |
tagttatttcgtttagtgtatgtttggatcgtagaagagtttgaccaaatcacaatgcgtcgttgtgattttctcaaactcaatgtgattccgaacattt |
415 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3491508 |
tagttatttcatttagtgtatgtttggatcgtagaagagtttgaccaaatcacaatgcgtcgttgtgattttgtcaaactcaatgtgattccgaacattt |
3491607 |
T |
|
| Q |
416 |
atttactttgtaaagaaataataggataatagaccaaagcttgtgacagtagatgtcagtcaagttaacaagctgatggttagattttccttgttgaagt |
515 |
Q |
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| T |
3491608 |
atttactttgtaaagaaataataggataatagaccaaagcttgtgacagtagatgtcagtcaagttaacaagctgatggttagattttccttgttgaagt |
3491707 |
T |
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| Q |
516 |
taaattagagttgaaaggggaataatctttgtattcctgttcaccactcatcataaattgcatcgaatagtttgagt |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3491708 |
taaattagagttgaaaggggaataatctttgtattcctgttcaccactcatcataaattgcatcgaatagtttgagt |
3491784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 4346453 - 4346600
Alignment:
| Q |
112 |
ttgttttgagacatcaagatgtgaaggggaagaaagatgaacaagtattgttgaataatgtgatcgaggaaacagctagaaaactggttgaacctcagaa |
211 |
Q |
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||||||||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||||| ||||||||||| || ||||| |||||| || ||| |
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| T |
4346453 |
ttgttttgagacaccaagatattgaggacaagaaagatgcacaaggattgttgaataatgtgattgaggaaacagcaagtaaacttgttgaagctaggaa |
4346552 |
T |
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| Q |
212 |
gggtaaggtgaaagctttggttggtgcatttgaaactttaatttctct |
259 |
Q |
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| T |
4346553 |
gagcaaggttaaagcattggttggtgcatttgaaactgttatttctct |
4346600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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