View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18654_low_7 (Length: 512)
Name: NF18654_low_7
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 32 - 494
Target Start/End: Original strand, 5778822 - 5779287
Alignment:
| Q |
32 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
131 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5778822 |
tcctcaacctaaccaaaattctttactcatctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgtta |
5778921 |
T |
|
| Q |
132 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5778922 |
ttcaaccacggtatttgttccggatgacaaagcattcgcaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctc |
5779021 |
T |
|
| Q |
232 |
aaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacggtggcaaccgaaatcatgggcc |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5779022 |
aaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatatgcatttgcaagatacggtggcaaccgaaatcatgggcc |
5779121 |
T |
|
| Q |
332 |
aggctacatataggataaacatcact---atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgttactcggactttgtatgatcg |
428 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5779122 |
aggctacatataggataaacatcactgtgatggttaacggctctgtggccgtcagcaacaacattgtccgagctcttgttactcggactttgtatgatcg |
5779221 |
T |
|
| Q |
429 |
ctctccagttgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgtgcccatcac |
494 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
5779222 |
ctctccaatcgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgcgctcatcac |
5779287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 59 - 480
Target Start/End: Original strand, 5817125 - 5817548
Alignment:
| Q |
59 |
cctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattcaaccacggtatttgttccggatga |
158 |
Q |
| |
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||||| ||||||||||| ||||| | |||| |||||| |||| | ||||||| |||||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
5817125 |
cctctgacactttctttgaagcaacttcggtgtttcaatctcacgtcattgaccttgagattgacactcgtgatccaattacaatattt-ttcctgatga |
5817223 |
T |
|
| Q |
159 |
caaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttg |
258 |
Q |
| |
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|||||||||| || ||||| |||||| ||||||||| |||||||||| ||||||||||||||||| |||||| | |||||||| |||| ||||||||| |
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| T |
5817224 |
caaagcattcgcagatgcttatgtttctaaaagatataagtcgcttagtgacgataacaagtattttgttctcgagtgtcatatattgagagaatatttt |
5817323 |
T |
|
| Q |
259 |
cctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacggtggcaaccgaaatcatgggccaggctacatataggataaacatcact- |
357 |
Q |
| |
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|||| || ||| ||| | |||||| ||||| | ||||||||||| | ||||||| | |||||||||| |||| || ||||| ||||||||||||| |
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| T |
5817324 |
tctcccgccgtctttccccaaattgtcaatgtttggcatttgcaagtcatggtggcagtcaaaatcatggggcaggataaatatatgataaacatcactg |
5817423 |
T |
|
| Q |
358 |
--atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgttactcggactttgtatgatcgctctccagttgctgtctacgctgtctc |
455 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||| ||| ||||| |||| |
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| T |
5817424 |
caatggttaacggctctgtggccatcagcaacaacattgttcgagctctcgttacttggacattgtatgatcgctctctggttgttgtttacgccttctc |
5817523 |
T |
|
| Q |
456 |
caaggtgttgatgccgaaagagctt |
480 |
Q |
| |
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||||||||||||||| ||||||||| |
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|
| T |
5817524 |
caaggtgttgatgcccaaagagctt |
5817548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 35 - 257
Target Start/End: Complemental strand, 5796958 - 5796736
Alignment:
| Q |
35 |
tcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgttattc |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
5796958 |
tcaacctaaccaaaattctttactcctctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgttatcc |
5796859 |
T |
|
| Q |
135 |
aaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaagtatttcgttctcaaa |
234 |
Q |
| |
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|||||||||||||||| | ||| ||||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||| |
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| T |
5796858 |
aaccacggtatttgtttctgataacaaagcattcgtagatgctactgtttccaaaagatacaagtcgcttagcgacaataacaaatattttgttctcaag |
5796759 |
T |
|
| Q |
235 |
tgtcatatgttgaaagaatattt |
257 |
Q |
| |
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|||||| | | || ||||||||| |
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| T |
5796758 |
tgtcatgtatcgagagaatattt |
5796736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 5796550 - 5796736
Alignment:
| Q |
32 |
tcctcaacctaaccaaaattctttacacctctcacactttctttaaagcagcatcggagtttcattctctccgcattgacagtgagattgacactcgtta |
131 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
5796550 |
tcctcaacctaaccaaaattctttactcctctcacactttctttaaagcaacctcggagtttcattctctcggcattgacagtgatattgacactcgtta |
5796649 |
T |
|
| Q |
132 |
ttcaaccacggtatttgttccggatgacaaagcattcacaaatgctactgtttccaaaagatatgagtcgcttagcgacgataacaa |
218 |
Q |
| |
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| |||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| |||||||||| |
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| T |
5796650 |
tccaaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactcgcttagcaacgataacaa |
5796736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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