View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18654_low_8 (Length: 495)
Name: NF18654_low_8
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Original strand, 35696779 - 35697258
Alignment:
| Q |
16 |
atgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgnnnn |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696779 |
atgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaagcgaaaa |
35696878 |
T |
|
| Q |
116 |
nnntgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696879 |
aaatgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactgggaagaaa |
35696978 |
T |
|
| Q |
216 |
ggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696979 |
ggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgatagcgaaaggattgtatccgttgccat |
35697078 |
T |
|
| Q |
316 |
tgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatggaccnnnn |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697079 |
tgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggagatgttgaacacgaagatggaccggtg |
35697178 |
T |
|
| Q |
416 |
nnnacagatagatataccgcagggttatgatcattttgggaataataataaagatagtgtgaagaaaaatggggaacaaa |
495 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||| |||| |||||| |
|
|
| T |
35697179 |
gagacagatagatataccgcaggtttatgatcatttggggaataataataatggtagtgtgaagaaaactgggaaacaaa |
35697258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University