View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18655_high_1 (Length: 801)
Name: NF18655_high_1
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 205 - 784
Target Start/End: Complemental strand, 28411725 - 28411157
Alignment:
| Q |
205 |
ggttgtcagaaatgtgtaaatgtgttgtctcaattttcattcatggtcccccacacaactacgtttgcacatacaaaggatgaatgagagtcacacgtaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
28411725 |
ggttgtcagaaatgtgtaaatgtgttgtctcaattttcattcatggtcccccacacaactacgt-----------aaggatgaatgagagtcacacgtga |
28411637 |
T |
|
| Q |
305 |
agataagattaaatagaaacattcaaatatccgatttctcaacttattccaagttccatccaacacacttcaaaattgttatcttgagctcattgtgagt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28411636 |
agataagattaaatagaaacattcaaatatccgatttctcaacttattccaagttccatccaacacacttcaaaattgttatcttgagctcattgtgagt |
28411537 |
T |
|
| Q |
405 |
tgagatatggcaaaatctggaaatttggtatcccaaagaagcttcagctcaatattcaatccatgccacactgctaccaaggccaaacccttcatttttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28411536 |
tgagatatggcaaaatctggaaatttggtatcccaaagaagcttcagctcaatattcaatccatgccacactgctaccaaggccaaacccttcagttttc |
28411437 |
T |
|
| Q |
505 |
tctctcagtttcacacttacaataatactagtggtagtgtaaccatcactgcatctaccaaaagaaaggacaacttgaactctccattggtaattctata |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28411436 |
tctctcagtttcacacttacaataatactagtggtagtgtaaccatcactgcatctaccaaaagaaaggacaacttggactctccattggtaattctata |
28411337 |
T |
|
| Q |
605 |
tacagtctcccttctcactttaattctgtgatattagcatgccttttcttatatccatgattttgtgttaggatcacaagtagagttcatagtgttttta |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28411336 |
tacagtctcccttctcactttaattctgtgatattagcatgccttttcttatatccatgattttgtgttaagatcacaagtagagttcatagtgttttta |
28411237 |
T |
|
| Q |
705 |
gtccctgttatgtaatttcaatctggccttctgtccttacaatttcacattcctccacttttagtccttagtggaatatt |
784 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28411236 |
gtccctgttatgtaagttcaatctggccttctgtccttacaatttcacattcctccacttttagtccttagtggaatatt |
28411157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 28411912 - 28411816
Alignment:
| Q |
19 |
tatttattatttgagttgatggttttgttttttaattcgtttaaactccaaacatatttcttagtcaaattaaattattcttgtatttgaatgattt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28411912 |
tatttattatttgagttgatggttttgttttttaattcgtttaaactccaaacatatttcttagtcaaattaaattattcttgtatttgaatgattt |
28411816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University