View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_high_11 (Length: 449)
Name: NF18655_high_11
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 39948994 - 39948554
Alignment:
| Q |
1 |
tgtgacaatatttgtagccctttgagctccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgaactgtcatccagcatgtccaat |
100 |
Q |
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| T |
39948994 |
tgtgacaatatttgtagccctttgagctccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgaactgtgatccagcatgtccaat |
39948895 |
T |
|
| Q |
101 |
ggtgttaaacccatgttgttcatattatttatagctgtccaatggtgttaaataatttggagattgttctttagag--atatttaagaaaaccataaact |
198 |
Q |
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| T |
39948894 |
ggtgttaaacccatgttgttcaaattatttatagctgtccaatggtgttaaataatttggagattgttctttagagcgatatttaagaaaaccataaact |
39948795 |
T |
|
| Q |
199 |
gtggttgaggaaacattcaagttattttagaaaaatggcaagtagtaccttttgtttgtgcacgtctgacaactaaatgcagaacattgctaccttcttt |
298 |
Q |
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| T |
39948794 |
gtggttgaggaaacattcaagttattttagaaaaatggcaagtagtaccttttgtttgtgcgcgtctgacaactaaatgcagaacattgttaccttcttt |
39948695 |
T |
|
| Q |
299 |
gtctttgactgataacaatcgtaatctatggtttcctctcactaactttactaggattttcaaagcctccagatggttatagcgaacacacaagtgtaga |
398 |
Q |
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| T |
39948694 |
gtctttgactgataagaatcgtaatctatggtttcctctcactaactttactaggattttcaaagcctccagatggttatagcgaacacacaagtgtaga |
39948595 |
T |
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| Q |
399 |
at-gaaccatgatcatcagtctcaaacatcaccttgatgat |
438 |
Q |
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| T |
39948594 |
atggaaccatgatcatcagtctcaaacatcaccttgatgat |
39948554 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 33220378 - 33220309
Alignment:
| Q |
150 |
aaataatttggagattgttctttagagatatttaagaaaaccataaactgtggttgaggaaacattcaag |
219 |
Q |
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| T |
33220378 |
aaataatgtgaagatagttctttagagacttttgagaaaatcataaactatggttgaaaaaacattcaag |
33220309 |
T |
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