View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_high_12 (Length: 441)
Name: NF18655_high_12
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 35154820 - 35155241
Alignment:
| Q |
1 |
ggtcgtattacaaagaaagagcttagcgactcattacaaaatcttggaatttgcatctctgaagaagatttggttcaaatgattgaaaaaatcgacgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35154820 |
ggtcgtattacaaagaaagagcttagcgactcattacaaaatcttggaatttgcatctctgaagaagatttggttcaaatgattgaaaaaatcgacgtaa |
35154919 |
T |
|
| Q |
101 |
atggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggaggaggatatgaaagaggcattcaatgt |
200 |
Q |
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| T |
35154920 |
atggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggaggaggatatgaaagaggcattcaatgt |
35155019 |
T |
|
| Q |
201 |
gtttgatcaaaatggagatgggttcatatcgggggaggaattaagcgcggtgttatcttctttgggcttaaagcatggaaaaactttagaagattgcaaa |
300 |
Q |
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| T |
35155020 |
gtttgatcaaaatggagatgggttcatatcgggggaggaattaagcgcggtgttatcttctttgggcttaaagcatggaaaaactttagaagattgcaaa |
35155119 |
T |
|
| Q |
301 |
aatatgatcaagaaagttgatgtggatggtgatggaatggttaacttcaaagaatttaagcaaatgatgaaggctggagcttttgctgctgattcattga |
400 |
Q |
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| T |
35155120 |
aatatgatcaagaaagttgatgtggatggtgatggaatggttaacttcaaagaatttcagcaaatgatgaaggctggagcttttgctgctgattcattga |
35155219 |
T |
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| Q |
401 |
gttgatgcatggtagagggtgt |
422 |
Q |
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| T |
35155220 |
gttgatgcatggtagagggtgt |
35155241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18520337 - 18520193
Alignment:
| Q |
1 |
ggtcgtattacaaagaaagagcttagcgactcattacaaaatcttggaatttgcatctctgaagaagatt-tggttcaaatgattgaaaaaatcgacgta |
99 |
Q |
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|||||||||| ||| ||||||||||| ||| | ||| ||||| |||| |||||||||||| || || || | |||||||||||||||||||| ||||| |
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| T |
18520337 |
ggtcgtattataaa-aaagagcttagagacccgttataaaattttgggatttgcatctctcaacaattttatttttcaaatgattgaaaaaatcaacgta |
18520239 |
T |
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| Q |
100 |
aatggagatggatatgttgacattgacgaatttggtgagttatacc |
145 |
Q |
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| T |
18520238 |
aatggagacgaatatgttgacattgacgaatttagcgagttctacc |
18520193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 25393557 - 25393648
Alignment:
| Q |
124 |
gacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggaggaggatatgaaagaggcattcaatgtgtttgatcaaaatgg |
215 |
Q |
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||||| |||||||||||||| ||| | || ||||| ||||||||||| ||||| || |||| || || |||||||| |||||||||||||| |
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| T |
25393557 |
gacgagtttggtgagttatatcaatccatcatggacgaaaaagatgaagaggaagacatgagggaagctttcaatgtctttgatcaaaatgg |
25393648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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