View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18655_high_18 (Length: 364)

Name: NF18655_high_18
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18655_high_18
NF18655_high_18
[»] chr6 (5 HSPs)
chr6 (13-347)||(2329660-2329994)
chr6 (134-247)||(31122570-31122684)
chr6 (123-224)||(17695741-17695843)
chr6 (130-232)||(22919672-22919774)
chr6 (130-232)||(17230994-17231097)
[»] chr8 (12 HSPs)
chr8 (123-247)||(27864413-27864537)
chr8 (130-239)||(17013898-17014007)
chr8 (130-239)||(17543194-17543303)
chr8 (123-232)||(31392522-31392631)
chr8 (132-248)||(27234290-27234408)
chr8 (130-232)||(24904360-24904462)
chr8 (130-227)||(24434175-24434272)
chr8 (167-247)||(452225-452305)
chr8 (130-223)||(24444221-24444314)
chr8 (271-343)||(452331-452403)
chr8 (167-247)||(18696881-18696961)
chr8 (271-315)||(18696811-18696855)
[»] chr7 (6 HSPs)
chr7 (130-232)||(710894-710996)
chr7 (123-232)||(2348607-2348716)
chr7 (129-232)||(20099787-20099890)
chr7 (132-221)||(748929-749018)
chr7 (132-232)||(23599636-23599736)
chr7 (130-247)||(2251015-2251132)
[»] scaffold0012 (1 HSPs)
scaffold0012 (130-232)||(31941-32043)
[»] chr3 (9 HSPs)
chr3 (130-232)||(6174227-6174329)
chr3 (130-232)||(16415626-16415728)
chr3 (130-232)||(18516600-18516702)
chr3 (130-247)||(29234446-29234562)
chr3 (130-247)||(16315445-16315562)
chr3 (130-247)||(18496439-18496556)
chr3 (130-227)||(23375605-23375702)
chr3 (130-227)||(5897845-5897941)
chr3 (130-227)||(5887861-5887957)
[»] chr2 (6 HSPs)
chr2 (130-232)||(22591652-22591754)
chr2 (123-208)||(18011082-18011167)
chr2 (130-227)||(18938039-18938135)
chr2 (167-247)||(15704925-15705005)
chr2 (177-224)||(2649229-2649276)
chr2 (271-315)||(15720116-15720160)
[»] chr1 (7 HSPs)
chr1 (130-232)||(20963597-20963699)
chr1 (123-229)||(28917506-28917612)
chr1 (130-247)||(24201098-24201214)
chr1 (123-227)||(17903668-17903772)
chr1 (130-232)||(20980502-20980602)
chr1 (130-227)||(16839811-16839907)
chr1 (130-227)||(16849741-16849837)
[»] chr5 (2 HSPs)
chr5 (123-232)||(4732697-4732806)
chr5 (130-232)||(26726088-26726190)
[»] chr4 (6 HSPs)
chr4 (130-232)||(3720371-3720473)
chr4 (130-232)||(14701045-14701147)
chr4 (132-248)||(23652440-23652557)
chr4 (130-227)||(3733458-3733554)
chr4 (179-227)||(49637401-49637449)
chr4 (179-227)||(49640694-49640742)
[»] scaffold0175 (1 HSPs)
scaffold0175 (130-227)||(29540-29637)
[»] scaffold0067 (1 HSPs)
scaffold0067 (130-247)||(26505-26622)
[»] scaffold0062 (2 HSPs)
scaffold0062 (167-247)||(53837-53917)
scaffold0062 (271-315)||(68673-68717)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 2329660 - 2329994
Alignment:
Q  13 aaaatccaactccaaagcaccatggcaatagcagacnnnnnnnttaacatcaaacacacgagtttttaaccccataagcttctttaaacatgaaaaataa 112  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329660 aaaatccaactccaaagcaccatggcaatagcagacaaaaaaattaacatcaaacacacgagtttttaaccccataagcttctttaaacatgaaaaataa 2329759  T
Q  113 ataaaaattaatgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2329760 ataaaaattaatgaccgtgcatcaacactagtttttagtcatgtttatttcgtgtttatgacaattagagagtcatctgcttgtaattcatggtgaaatt 2329859  T
Q  213 agatcaaaacaggaataagatcccaaaagaagaaaagagaaaaatattcctaaatatgaagaatcgtgccacgatgagcaaagatcgtgccatgttgcaa 312  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329860 agatcaaaacaggaataagagcccaaaagaagaaaagagaaaaatattcctaaatatgaagaatcgtgccacgatgagcaaagatcgtgccatgttgcaa 2329959  T
Q  313 ggatgtggaattcaaggatactttctggaaacttc 347  Q
    |||||||||||||||||||||||||||||||||||    
T  2329960 ggatgtggaattcaaggatactttctggaaacttc 2329994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 31122570 - 31122684
Alignment:
Q  134 tcaacactagt-ttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataaga 232  Q
    ||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||| | ||||||| ||||| ||||    
T  31122570 tcaacactagtattttggtcatgtttatgtcgtttttatggcatttagagagtcaactgcttgtaattcatggtaaaatcatatcaaaataggaacaaga 31122669  T
Q  233 tcccaaaagaagaaa 247  Q
     ||||||||||||||    
T  31122670 gcccaaaagaagaaa 31122684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 17695741 - 17695843
Alignment:
Q  123 atgaccgtgcatcaacactagttttt-agtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaa 221  Q
    ||||| || ||||||||||||||||| |||| |||||||||| |  |||||||| ||||||||||| |||||| |||||||||||||||||||| |||||    
T  17695741 atgactgtacatcaacactagttttttagtcttgtttatgtctttattatggcatttagagagtcaactgcttataattcatggtgaaattagaccaaaa 17695840  T
Q  222 cag 224  Q
    |||    
T  17695841 cag 17695843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 22919672 - 22919774
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  22919672 tgcatcaacactagtttttagttatgtttatgtcgtttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 22919771  T
Q  230 aga 232  Q
    |||    
T  22919772 aga 22919774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 17230994 - 17231097
Alignment:
Q  130 tgcatcaacactagtttttagtcatgttt-atgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaat 228  Q
    |||||||||||||||||||||  |||||| ||||||| || ||| || ||| |||| || |||||||||| |||||||||||| ||| |||||||||||     
T  17230994 tgcatcaacactagtttttagctatgttttatgtcgttttcatgacatttaaagagacaactgcttgtaaatcatggtgaaatcagaccaaaacaggaac 17231093  T
Q  229 aaga 232  Q
    ||||    
T  17231094 aaga 17231097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 27864537 - 27864413
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||||||| |||||||||| ||| |||||     
T  27864537 atgactgtgcatcaatactagtttttagttatgtttatgtcgtttttatggcatttagagagacaactgcttgtaatttatggtgaaatcagaccaaaat 27864438  T
Q  223 aggaataagatcccaaaagaagaaa 247  Q
    ||||| |||| | ||| ||||||||    
T  27864437 aggaacaagagctcaagagaagaaa 27864413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 17014007 - 17013898
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || ||  || ||| |||||||||||| ||| ||||||||||| |    
T  17014007 tgcatcaacactagtttttagttatgtttatgtcgtttttatgacatttagagagacaactatttataaatcatggtgaaatcagaccaaaacaggaaca 17013908  T
Q  230 agatcccaaa 239  Q
    ||||| ||||    
T  17013907 agatctcaaa 17013898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 17543194 - 17543303
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || ||  || ||| |||||||||||| ||| ||||||||||| |    
T  17543194 tgcatcaacactagtttttagttatgtttatgtcgtttttatgacatttagagagacaactatttataaatcatggtgaaatcagaccaaaacaggaaca 17543293  T
Q  230 agatcccaaa 239  Q
    ||||| ||||    
T  17543294 agatctcaaa 17543303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 31392631 - 31392522
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| |||||||||||||||||||||   ||||||||||||| ||||||||| ||||||||  | |||||||||| ||||||||| || ||  ||||||    
T  31392631 atgactgtgcatcaacactagtttttacctatgtttatgtcgtttttatggcatttagagagataactgcttgtaaatcatggtgacataaggccaaaac 31392532  T
Q  223 aggaataaga 232  Q
    ||||||||||    
T  31392531 aggaataaga 31392522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 27234290 - 27234408
Alignment:
Q  132 catcaacactagttttt-agtcatgttt-atgtcgtgttta-tggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaat 228  Q
    ||||||||||||||||| |||||||||| |||| ||  ||| ||||| |||||||||||  |  ||||||||||||||||||| |||||||||||||||     
T  27234290 catcaacactagtttttcagtcatgttttatgttgttcttaatggcatttagagagtcaattagttgtaattcatggtgaaat-agatcaaaacaggaac 27234388  T
Q  229 aagatcccaaaagaagaaaa 248  Q
    |||| |||||||||||||||    
T  27234389 aagagcccaaaagaagaaaa 27234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 24904462 - 24904360
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||  ||||||| || |||||||||| |||| || |||| ||| ||||||||||| |    
T  24904462 tgcatcaacactagtttttagttatgtttatgtcatttttatgacatctagagagacaactgcttgtaaatcattgttaaatcagaccaaaacaggaaca 24904363  T
Q  230 aga 232  Q
    |||    
T  24904362 aga 24904360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 24434175 - 24434272
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    ||||| |||||||| ||||||| ||||||||||| | |||| | || | ||||||||| || ||||||| |||||||||||  ||| |||||||||||    
T  24434175 tgcattaacactagcttttagttatgtttatgtcatttttaggacattaagagagtcaactacttgtaaatcatggtgaaagcagaccaaaacaggaa 24434272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 452225 - 452305
Alignment:
Q  167 tttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataagatcccaaaagaagaaa 247  Q
    ||||||||| |||||||||||  | ||||||||||||||||| || |||||||||  |||| |||| | ||||||||||||    
T  452225 tttatggcatttagagagtcagttacttgtaattcatggtgagatcagatcaaaaacggaacaagagctcaaaagaagaaa 452305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 24444221 - 24444314
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaaca 223  Q
    ||||| |||||||| ||||||| ||||||||||| | |||| | || | ||||||||| || ||||||| |||||||||||  ||| |||||||    
T  24444221 tgcattaacactagcttttagttatgtttatgtcatttttaggacattaagagagtcaactacttgtaaatcatggtgaaagcagaccaaaaca 24444314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 452331 - 452403
Alignment:
Q  271 aagaatcgtgccacgatgagcaaagatcgtgccatgttgcaaggatgtggaattcaaggatactttctggaaa 343  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||| | ||||||||   |||| |||||||||    
T  452331 aagaatcgtgccacgttgagcaaggatcatggcatgttgcaaggacgcggaattcactaatacgttctggaaa 452403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 18696961 - 18696881
Alignment:
Q  167 tttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataagatcccaaaagaagaaa 247  Q
    ||||||||| |||||||||||  | ||||||||||||||||| || |||| ||||  |||| |||| | ||||||||||||    
T  18696961 tttatggcatttagagagtcaattacttgtaattcatggtgagatcagataaaaaacggaacaagagctcaaaagaagaaa 18696881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 18696855 - 18696811
Alignment:
Q  271 aagaatcgtgccacgatgagcaaagatcgtgccatgttgcaagga 315  Q
    ||||||||||||||| ||||||| |||| || |||||||||||||    
T  18696855 aagaatcgtgccacgttgagcaaggatcatggcatgttgcaagga 18696811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 710996 - 710894
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||  ||||||| || |||||||||| ||||||| |||||||| ||||||||||| |    
T  710996 tgcatcaacactagtttttagttatgtttatgtcgtttttatgacatatagagagacaactgcttgtaaatcatggttaaattagaccaaaacaggaaca 710897  T
Q  230 aga 232  Q
    |||    
T  710896 aga 710894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 2348607 - 2348716
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| |||||||||||||| |||||||  ||||||||| ||| ||||||||| |||||||| || |||||||||| |||||||||||| ||| ||||||    
T  2348607 atgactgtgcatcaacactaatttttagctatgtttatgacgtttttatggcatttagagagacaactgcttgtaaatcatggtgaaatcagaccaaaac 2348706  T
Q  223 aggaataaga 232  Q
    ||||| ||||    
T  2348707 aggaacaaga 2348716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 20099787 - 20099890
Alignment:
Q  129 gtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaat 228  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| |  || ||||| | |||||||||||| ||| |||||||||||     
T  20099787 gtgcatcaacactagtttttagctatgtttatgtcgtttttatggcatttagagagacgactacttgttaatcatggtgaaatcagaccaaaacaggaac 20099886  T
Q  229 aaga 232  Q
    ||||    
T  20099887 aaga 20099890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 749018 - 748929
Alignment:
Q  132 catcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaa 221  Q
    ||||||||||| |||||||  ||||||||||||| ||||||||| |||||||| || |||||||||| |||||||||||| ||| |||||    
T  749018 catcaacactaatttttagctatgtttatgtcgtttttatggcatttagagagacaactgcttgtaaatcatggtgaaatcagaccaaaa 748929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 23599736 - 23599636
Alignment:
Q  132 catcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataag 231  Q
    |||||||||||||||||||| ||||||||||||| |||||| || |||||||| || ||  || ||| |||||||||||| ||| ||||||||||| |||    
T  23599736 catcaacactagtttttagttatgtttatgtcgtttttatgacatttagagagacaactatttataaatcatggtgaaatcagaccaaaacaggaacaag 23599637  T
Q  232 a 232  Q
    |    
T  23599636 a 23599636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 2251015 - 2251132
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||| ||||||||| |||| | || | | ||||||| ||  |||||| |||| ||||||| ||| ||||||||||| |    
T  2251015 tgcatcaacactagtttttagttatgattatgtcgtttttaggacattaaaagagtcaactatttgtaaatcatagtgaaatcagaccaaaacaggaaca 2251114  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  2251115 agagctcaaaagacgaaa 2251132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 32043 - 31941
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||  ||||||| || |||||||||| ||||||| |||| ||| ||||||||||| |    
T  32043 tgcatcaacactagtttttagttatgtttatgtcgtttttatgacatctagagagacaactgcttgtaaatcatggttaaatcagaccaaaacaggaaca 31944  T
Q  230 aga 232  Q
    |||    
T  31943 aga 31941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 6174329 - 6174227
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||  ||||||||||||| |||||| || |||||||| || |||||||||| ||||||| |||| ||| ||||||||||| |    
T  6174329 tgcatcaacactagtttttagctatgtttatgtcgtttttatgacatttagagagacaactgcttgtaaatcatggttaaatcagaccaaaacaggaaca 6174230  T
Q  230 aga 232  Q
    |||    
T  6174229 aga 6174227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 16415728 - 16415626
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  16415728 tgcatcaacactagtttttagttatgtttatgtcgtttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 16415629  T
Q  230 aga 232  Q
    |||    
T  16415628 aga 16415626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 18516702 - 18516600
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  18516702 tgcatcaacactagtttttagttatgtttatgtcgtttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 18516603  T
Q  230 aga 232  Q
    |||    
T  18516602 aga 18516600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 29234562 - 29234446
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  29234562 tgcatcaacactagtttttagttatgtttatgtcgt-tttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 29234464  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  29234463 agagctcaaaagacgaaa 29234446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 16315562 - 16315445
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||| ||||||||||  ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  16315562 tgcatcaacattagtttttagctatgtttatgtcgtttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 16315463  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  16315462 agagctcaaaagacgaaa 16315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 18496556 - 18496439
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||| ||||||||||  ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  18496556 tgcatcaacattagtttttagctatgtttatgtcgtttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 18496457  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  18496456 agagctcaaaagacgaaa 18496439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 23375702 - 23375605
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| ||||||||||| | |||| | || | ||||||||| ||  |||||| |||||||||||| ||| |||||||||||    
T  23375702 tgcatcaacactagcttttagttatgtttatgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaa 23375605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 5897941 - 5897845
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  5897941 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 5897845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 5887957 - 5887861
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| | |||||||||||||    
T  5887957 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcatatcaaaacaggaa 5887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 22591652 - 22591754
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| |||| |||||||| |||||| ||  ||||||| || |||||||||| ||||||| |||| ||| ||||||||||| |    
T  22591652 tgcatcaacactagtttttagttatgtatatgtcgtttttatgacatctagagagacaactgcttgtaaatcatggttaaatcagaccaaaacaggaaca 22591751  T
Q  230 aga 232  Q
    |||    
T  22591752 aga 22591754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 18011082 - 18011167
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtga 208  Q
    ||||| ||||||||||||||||||||||  ||||||||||||| |||||  || |||||||| || |||||||||| |||||||||    
T  18011082 atgactgtgcatcaacactagtttttagctatgtttatgtcgtttttatcacatttagagagacaactgcttgtaaatcatggtga 18011167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 18938039 - 18938135
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  18938039 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 18938135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 15705005 - 15704925
Alignment:
Q  167 tttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataagatcccaaaagaagaaa 247  Q
    ||||||||| |||||||||||  | ||||||||||||||||| || |||| ||||  |||| |||| | ||||||||||||    
T  15705005 tttatggcatttagagagtcaattacttgtaattcatggtgagatcagataaaaaacggaacaagagctcaaaagaagaaa 15704925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 2649276 - 2649229
Alignment:
Q  177 ttagagagtcatctgcttgtaattcatggtgaaattagatcaaaacag 224  Q
    ||||||||||| || |||||||||||| ||||||| ||||||||||||    
T  2649276 ttagagagtcaactacttgtaattcatagtgaaatcagatcaaaacag 2649229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 15720160 - 15720116
Alignment:
Q  271 aagaatcgtgccacgatgagcaaagatcgtgccatgttgcaagga 315  Q
    ||||||||||||||| ||||||| |||| || |||||||||||||    
T  15720160 aagaatcgtgccacgttgagcaaggatcatggcatgttgcaagga 15720116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 20963597 - 20963699
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||||||||||||||| |||| |||||||||| || |||||| ||||||||||| || || ||||||| ||||||| |||| ||| ||||||||||| |    
T  20963597 tgcatcaacactagtttctagttatgtttatgtagtttttatgacaattagagagacaactacttgtaaatcatggttaaatcagaccaaaacaggaaca 20963696  T
Q  230 aga 232  Q
    |||    
T  20963697 aga 20963699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 28917506 - 28917612
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| ||||||||||||||||||||||  ||||||||||||| ||||||||| | |||||| || |||||||||| | || ||||||| ||  ||||||    
T  28917506 atgactgtgcatcaacactagtttttagctatgtttatgtcgtttttatggcattaagagagacaactgcttgtaaataatagtgaaatcaggccaaaac 28917605  T
Q  223 aggaata 229  Q
    |||||||    
T  28917606 aggaata 28917612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 24201214 - 24201098
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||||||||||| |||||||| ||||||||||||| |||| | || | ||||||||| ||  |||||| |||||||||||| ||| ||||||||||| |    
T  24201214 tgcatcaacactaatttttagttatgtttatgtcgt-tttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccaaaacaggaaca 24201116  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  24201115 agagctcaaaagacgaaa 24201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 17903772 - 17903668
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| ||||||||||||||||||||||  |||||||| |    ||||||||| |||||||| || |||||||||| |||||||||||| |||  |||||    
T  17903772 atgactgtgcatcaacactagtttttagctatgtttattttacttttatggcatttagagagacaactgcttgtaaatcatggtgaaatcagactaaaac 17903673  T
Q  223 aggaa 227  Q
    |||||    
T  17903672 aggaa 17903668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 20980502 - 20980602
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||| |||||||||||||||| ||||||  ||||| |||||| ||||||||||| || || | ||||| ||||||| |||| ||| ||||||||||| |    
T  20980502 tgcattaacactagtttttagttatgttt--gtcgtttttatgacaattagagagacaactacctgtaaatcatggttaaatcagaccaaaacaggaaca 20980599  T
Q  230 aga 232  Q
    |||    
T  20980600 aga 20980602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 16839907 - 16839811
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  16839907 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 16839811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 16849837 - 16849741
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  16849837 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 16849741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 4732806 - 4732697
Alignment:
Q  123 atgaccgtgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaac 222  Q
    ||||| ||||||||||||||||||||||  ||||||||||||| || |||| | |||||||| || ||| |||||| |||||||||||| |||  |||||    
T  4732806 atgactgtgcatcaacactagtttttagctatgtttatgtcgttttaatggtatttagagagacaactgtttgtaaatcatggtgaaatcagactaaaac 4732707  T
Q  223 aggaataaga 232  Q
    ||||| ||||    
T  4732706 aggaacaaga 4732697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 26726088 - 26726190
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || ||  || ||| |||||||||||| ||| ||||| ||||| |    
T  26726088 tgcatcaacactagtttttagttatgtttatgtcgtttttatgacatttagagagacaactatttataaatcatggtgaaatcagaccaaaaaaggaaca 26726187  T
Q  230 aga 232  Q
    |||    
T  26726188 aga 26726190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 3720473 - 3720371
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||||||| |||||||||||| ||||||||||||| |||||| || |||||||| || ||  || ||| |||||||||||| ||| ||||||||||| |    
T  3720473 tgcatcaacgctagtttttagttatgtttatgtcgtttttatgacatttagagagacaactatttataaatcatggtgaaatcagaccaaaacaggaaca 3720374  T
Q  230 aga 232  Q
    |||    
T  3720373 aga 3720371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 14701045 - 14701147
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||  ||||||| || || ||||||| ||||||| |||| ||| ||||||||||| |    
T  14701045 tgcatcaacactagtttttagttatgtttatgtcatttttatgacatctagagagacaactacttgtaaatcatggttaaatcagaccaaaacaggaaca 14701144  T
Q  230 aga 232  Q
    |||    
T  14701145 aga 14701147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 23652440 - 23652557
Alignment:
Q  132 catcaacactagttttt-agtcatgtttatgtcgtgttta-tggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||||||||||||||| |||||| || ||||| | |||| ||||| |||| ||||||  |  ||||||||||||||||||| ||||||||||||||| |    
T  23652440 catcaacactagttttttagtcatatt-atgtcttttttaatggcatttagggagtcaattaattgtaattcatggtgaaatcagatcaaaacaggaaaa 23652538  T
Q  230 agatcccaaaagaagaaaa 248  Q
    ||| |||||||||||||||    
T  23652539 agagcccaaaagaagaaaa 23652557  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 3733458 - 3733554
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||| ||||||| |||||| |||| | |||| | || | ||||||||| ||  |||||| |||||||||||| | |||||||||||||    
T  3733458 tgcatcaacactagcttttagttatgttt-tgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcatatcaaaacaggaa 3733554  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 49637449 - 49637401
Alignment:
Q  179 agagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  49637449 agagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 49637401  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 49640742 - 49640694
Alignment:
Q  179 agagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    ||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  49640742 agagagtcaactatttgtaaatcatggtgaaatcagatcaaaacaggaa 49640694  T

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Target: scaffold0175 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 29637 - 29540
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaa 227  Q
    |||||||||||||||||||||| ||||||||||| | |||||| || ||||||||  | |||||||||| ||||||| |||| ||| ||||| |||||    
T  29637 tgcatcaacactagtttttagttatgtttatgtcatttttatgacatttagagagataactgcttgtaaatcatggttaaatcagaccaaaataggaa 29540  T

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Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 26505 - 26622
Alignment:
Q  130 tgcatcaacactagtttttagtcatgtttatgtcgtgtttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaata 229  Q
    ||||| |||||||| ||||||| ||||||||||| | |||| | || | ||||||||| ||  |||||| |||||||||||| ||| | ||||||||| |    
T  26505 tgcattaacactagcttttagttatgtttatgtcatttttaggacattaagagagtcaactatttgtaaatcatggtgaaatcagaccgaaacaggaaca 26604  T
Q  230 agatcccaaaagaagaaa 247  Q
    ||| | ||||||| ||||    
T  26605 agagctcaaaagacgaaa 26622  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 53917 - 53837
Alignment:
Q  167 tttatggcaattagagagtcatctgcttgtaattcatggtgaaattagatcaaaacaggaataagatcccaaaagaagaaa 247  Q
    ||||||||| |||||||||||  | ||||||||||||||||| || |||| ||||  |||| |||| | ||||||||||||    
T  53917 tttatggcatttagagagtcaattacttgtaattcatggtgagatcagataaaaaacggaacaagagctcaaaagaagaaa 53837  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 68717 - 68673
Alignment:
Q  271 aagaatcgtgccacgatgagcaaagatcgtgccatgttgcaagga 315  Q
    ||||||||||||||| ||||||| |||| || |||||||||||||    
T  68717 aagaatcgtgccacgttgagcaaggatcatggcatgttgcaagga 68673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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