View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_high_28 (Length: 261)
Name: NF18655_high_28
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 42805304 - 42805362
Alignment:
| Q |
11 |
aatgaaaaggtgcatacttgctgcttaccccttcgagtttttaggtgagtgtaaattag |
69 |
Q |
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| T |
42805304 |
aatgaaaaggtgcatatttgctgcatatcccttcgagtttttaggtgagtgtaaattag |
42805362 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 42805445 - 42805499
Alignment:
| Q |
186 |
tgtttgtgttacatacataaaattaacacatatgtatggatcctacatccattgtcact |
244 |
Q |
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| T |
42805445 |
tgtttgtgttacatacataaaattaacaca----tatggatcctacatccattgtcact |
42805499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 42807738 - 42807796
Alignment:
| Q |
12 |
atgaaaaggtgcatacttgctgcttaccccttcgagttttt-aggtgagtgtaaattag |
69 |
Q |
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| T |
42807738 |
atgaaaaggtgcatacttgcttcttacaccttcaagtttttaaggtgagtgtaaattag |
42807796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 42805429 - 42805470
Alignment:
| Q |
135 |
tgtattttcacaatgttgtttgtgttacatacataatattaa |
176 |
Q |
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| T |
42805429 |
tgtattttcacaatgttgtttgtgttacatacataaaattaa |
42805470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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