View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_high_37 (Length: 228)
Name: NF18655_high_37
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_37 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5823277 - 5823488
Alignment:
| Q |
1 |
ctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggt |
100 |
Q |
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| T |
5823277 |
ctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggt |
5823376 |
T |
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| Q |
101 |
tattgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctat |
200 |
Q |
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| T |
5823377 |
tattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcatctgaatgctat |
5823476 |
T |
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| Q |
201 |
tttggacttaac |
212 |
Q |
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|||||||||||| |
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| T |
5823477 |
tttggacttaac |
5823488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 5832763 - 5832578
Alignment:
| Q |
27 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
126 |
Q |
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| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
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| Q |
127 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaac |
212 |
Q |
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| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaac |
5832578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 78088 - 78255
Alignment:
| Q |
45 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
144 |
Q |
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|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
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| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
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| Q |
145 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaac |
212 |
Q |
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| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaac |
78255 |
T |
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