View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_high_42 (Length: 213)
Name: NF18655_high_42
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34675996 - 34676112
Alignment:
| Q |
1 |
tatttctttacacgtgttgatgattcacatcattaatagactccc-tagtcttctccttaaatttaaatgcccctaggaacttcttttccaaccacctcc |
99 |
Q |
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| T |
34675996 |
tatttccttacacgtgttgatgattcacatcattaatagactcccctagtattctccttaaatttaaatgcccctaggaacttcttttccgaccacctcc |
34676095 |
T |
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| Q |
100 |
caatattatgcatctta |
116 |
Q |
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||||||||||||||||| |
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| T |
34676096 |
caatattatgcatctta |
34676112 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 34676366 - 34676452
Alignment:
| Q |
116 |
agtaaatctttaggtgtttgatctatgcaacttccttgaaatctcacaagtcaatctatttccaatcatttacctattattgatgat |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676366 |
agtaaatttttaggtgtttgatctatgcaacttccttgaaatctcacaagtcaatctatttccaatcatttacctattattgatgat |
34676452 |
T |
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