View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18655_high_6 (Length: 496)

Name: NF18655_high_6
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18655_high_6
NF18655_high_6
[»] chr3 (25 HSPs)
chr3 (60-478)||(24616602-24617020)
chr3 (254-454)||(24106949-24107150)
chr3 (256-418)||(24113982-24114144)
chr3 (73-258)||(24106733-24106914)
chr3 (73-147)||(23358623-23358697)
chr3 (73-147)||(23363444-23363518)
chr3 (73-147)||(23693922-23693996)
chr3 (73-147)||(23712362-23712436)
chr3 (73-147)||(23730818-23730892)
chr3 (73-147)||(23749273-23749347)
chr3 (157-211)||(24106101-24106155)
chr3 (157-211)||(24113447-24113501)
chr3 (157-211)||(24617564-24617618)
chr3 (302-376)||(23693653-23693728)
chr3 (302-376)||(23712093-23712168)
chr3 (302-376)||(23730549-23730624)
chr3 (302-376)||(23749004-23749079)
chr3 (158-258)||(23693790-23693885)
chr3 (158-258)||(23749141-23749236)
chr3 (158-258)||(23712230-23712325)
chr3 (158-258)||(23730686-23730781)
chr3 (256-341)||(23690206-23690295)
chr3 (256-341)||(24062443-24062532)
chr3 (446-475)||(24107488-24107517)
chr3 (14-43)||(24617041-24617070)
[»] chr6 (1 HSPs)
chr6 (401-473)||(29132768-29132841)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 60 - 478
Target Start/End: Complemental strand, 24617020 - 24616602
Alignment:
Q  60 tcagttaagtttataaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataaatagatgccaaa 159  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617020 tcagttaagttta--aaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataaatagatgccaaa 24616923  T
Q  160 ggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatat--tttgcttaagccaatagatgtgaccttaactgtactga 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  24616922 ggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatatattttgcttaagccaatagatgtgaccttaactgtactga 24616823  T
Q  258 tatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaagtat 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24616822 tatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaagtat 24616723  T
Q  358 taaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaagaacacatcttgaactttcttgactatatttggagaatgc 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24616722 taaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaaggacacatcttgaactttcttgactatatttggagaatgc 24616623  T
Q  458 acaagatctgtgggaacttgg 478  Q
    |||||||||||||||||||||    
T  24616622 acaagatctgtgggaacttgg 24616602  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 254 - 454
Target Start/End: Original strand, 24106949 - 24107150
Alignment:
Q  254 ctgatatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaa 353  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24106949 ctgatatacttcctctggatgagaatcaggtcataacaacgtaatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaa 24107048  T
Q  354 gtattaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaa-gaacacatcttgaactttcttgactatatttggag 452  Q
    | ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24107049 gaattaaagtactttcataaagatgctgacataactgcattaacattaatgtcttctaaatgaaggagcacatcttgaactttcttgactatatttggag 24107148  T
Q  453 aa 454  Q
    ||    
T  24107149 aa 24107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 256 - 418
Target Start/End: Original strand, 24113982 - 24114144
Alignment:
Q  256 gatatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaagt 355  Q
    |||||||||||| ||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||     
T  24113982 gatatacttcctctggatgagaatcaggccgtaacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaaga 24114081  T
Q  356 attaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaag 418  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  24114082 attaaagtaatttaataaagatgctgacataactgcattaactttaatgccttctaaatgaag 24114144  T

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Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 73 - 258
Target Start/End: Original strand, 24106733 - 24106914
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataaatagatgccaaaggggaaggaccgg 172  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| ||| |||| |||| || ||||||||||||||||| |||||||||||||||| |    
T  24106733 taaaccttatgcattgtactaagccttttgactaaaataaattaagatgtaaataaatacgtgattagcacataaatagataccaaaggggaaggaccag 24106832  T
Q  173 aatctcgtgatggagatttggttgaattcaattatgtatatatatattttgcttaagccaatagatgtgaccttaactgtactgat 258  Q
    || | | || |||| |||| |||||||| |||| ||    |||||||| ||| |||||||||||||||||||||||||||||||||    
T  24106833 aagcacatggtggaaatttagttgaattaaattgtg----tatatattgtgcataagccaatagatgtgaccttaactgtactgat 24106914  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23358697 - 23358623
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23358697 taaaccttatgcattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23358623  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23363518 - 23363444
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23363518 taaaccttatgcattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23363444  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23693996 - 23693922
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23693996 taaaccttatggattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23693922  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23712436 - 23712362
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23712436 taaaccttatggattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23712362  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23730892 - 23730818
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23730892 taaaccttatggattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23730818  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 23749347 - 23749273
Alignment:
Q  73 taaaccttatgcattgtacttacccttttgactaaaataaattaagctgtgaatatatacatgtttagcacataa 147  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||    
T  23749347 taaaccttatggattgtacttacccttttaactaaaataaattaagctgtgaataaatacaggttgagcacataa 23749273  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 24106101 - 24106155
Alignment:
Q  157 aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24106101 aaaggggaaggaccagaatctcgtgatggagatttggttgaattcaattatgtat 24106155  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 24113447 - 24113501
Alignment:
Q  157 aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat 211  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24113447 aaagtggaaggaccggaatcacgtgatggagatttggttgaattcaattatgtat 24113501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 24617618 - 24617564
Alignment:
Q  157 aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24617618 aaaggggaaggatcggaatctcgtgatggagatttggttgaattcaatcatgtat 24617564  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 23693728 - 23693653
Alignment:
Q  302 acaaaaacataactgcattaatattaacaaatcccgcaaaatttagac-ggaagtattaaagtaatttaataaaga 376  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||  ||||||| |||||||||||||    
T  23693728 acaaaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23693653  T

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Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 23712168 - 23712093
Alignment:
Q  302 acaaaaacataactgcattaatattaacaaatcccgcaaaatttagac-ggaagtattaaagtaatttaataaaga 376  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||  ||||||| |||||||||||||    
T  23712168 acaaaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23712093  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 23730624 - 23730549
Alignment:
Q  302 acaaaaacataactgcattaatattaacaaatcccgcaaaatttagac-ggaagtattaaagtaatttaataaaga 376  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||  ||||||| |||||||||||||    
T  23730624 acaaaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23730549  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 23749079 - 23749004
Alignment:
Q  302 acaaaaacataactgcattaatattaacaaatcccgcaaaatttagac-ggaagtattaaagtaatttaataaaga 376  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||  ||||||| |||||||||||||    
T  23749079 acaaaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23749004  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 23693885 - 23693790
Alignment:
Q  158 aaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatattttgcttaagccaatagatgtgaccttaactgtactga 257  Q
    ||||||||||||| ||| | | ||||||||||||||||||||| |||| ||||||||     | ||| |||||||||||||| |||||||||||| ||||    
T  23693885 aaggggaaggaccagaagcacatgatggagatttggttgaattaaattgtgtatata-----tgtgcataagccaatagatgcgaccttaactgtcctga 23693791  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 23749236 - 23749141
Alignment:
Q  158 aaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatattttgcttaagccaatagatgtgaccttaactgtactga 257  Q
    ||||||||||||| ||| | | ||||||||||||||||||||| |||| ||||||||     | ||| |||||||||||||| |||||||||||| ||||    
T  23749236 aaggggaaggaccagaagcacatgatggagatttggttgaattaaattgtgtatata-----tgtgcataagccaatagatgcgaccttaactgtcctga 23749142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 23712325 - 23712230
Alignment:
Q  158 aaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatattttgcttaagccaatagatgtgaccttaactgtactga 257  Q
    ||||||||||||  ||| | | ||||||||||||||||||||| |||| ||||||||     | ||| |||||||||||||| |||||||||||| ||||    
T  23712325 aaggggaaggactagaagcacatgatggagatttggttgaattaaattgtgtatata-----tgtgcataagccaatagatgcgaccttaactgtcctga 23712231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 23730781 - 23730686
Alignment:
Q  158 aaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtatatatatattttgcttaagccaatagatgtgaccttaactgtactga 257  Q
    ||||||||||||  ||| | | ||||||||||||||||||||| |||| ||||||||     | ||| |||||||||||||| |||||||||||| ||||    
T  23730781 aaggggaaggactagaagcacatgatggagatttggttgaattaaattgtgtatata-----tgtgcataagccaatagatgcgaccttaactgtcctga 23730687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 23690295 - 23690206
Alignment:
Q  256 gatatacttcctatggatgag----aatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaa 341  Q
    |||||||||||| ||||| ||    ||||||||||||||||  |||||||| |||||||||||  ||||||||| | |||||||| ||||    
T  23690295 gatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 23690206  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 24062532 - 24062443
Alignment:
Q  256 gatatacttcctatggatgag----aatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaa 341  Q
    |||||||||||| ||||| ||    ||||||||||||||||  |||||||| |||||||||||  ||||||||| | |||||||| ||||    
T  24062532 gatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 24062443  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 475
Target Start/End: Original strand, 24107488 - 24107517
Alignment:
Q  446 tttggagaatgcacaagatctgtgggaact 475  Q
    ||||||||||||||||||||||||||||||    
T  24107488 tttggagaatgcacaagatctgtgggaact 24107517  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 24617070 - 24617041
Alignment:
Q  14 aaatagaagtgtaaattcttggattttgat 43  Q
    ||||||||||||||||||||||||||||||    
T  24617070 aaatagaagtgtaaattcttggattttgat 24617041  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 29132841 - 29132768
Alignment:
Q  401 aatgtcttctaaatgaagaa-cacatcttgaactttcttgactatatttggagaatgcacaagatctgtgggaa 473  Q
    |||||||||||||||| ||| |   ||||||||| || | |||| ||||||||||| |||||||||||||||||    
T  29132841 aatgtcttctaaatgacgaagcttgtcttgaactctcataactaaatttggagaatacacaagatctgtgggaa 29132768  T

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