View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18655_low_11 (Length: 453)

Name: NF18655_low_11
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18655_low_11
NF18655_low_11
[»] chr7 (13 HSPs)
chr7 (18-441)||(8361032-8361452)
chr7 (243-400)||(8410303-8410460)
chr7 (249-411)||(8443086-8443248)
chr7 (104-206)||(8411341-8411439)
chr7 (125-166)||(8410480-8410521)
chr7 (279-325)||(8411286-8411332)
chr7 (43-77)||(8348760-8348794)
chr7 (99-140)||(7915265-7915306)
chr7 (313-354)||(8350127-8350168)
chr7 (289-354)||(8369054-8369119)
chr7 (297-350)||(8436382-8436435)
chr7 (313-354)||(8480945-8480986)
chr7 (297-361)||(8527688-8527752)
[»] scaffold0060 (2 HSPs)
scaffold0060 (237-403)||(68589-68761)
scaffold0060 (217-261)||(68491-68535)
[»] chr8 (1 HSPs)
chr8 (299-383)||(7763030-7763115)
[»] chr4 (1 HSPs)
chr4 (297-354)||(973068-973125)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 8361452 - 8361032
Alignment:
Q  18 tcctttctatgtcttgtccttatatgtgcaactttccatatttatctgtaataaacttgtcctatcttagtaagattcacccttataagctttgtaaggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8361452 tcctttctatgtcttgtccttatatgtgcaactttccatatttatctgtaataaacttgtcctatcttagtaagattcacacttataagctttgtaaggt 8361353  T
Q  118 tcaattatttataattgatcaatttatacttgttcaatcttagtcactactagtatttaaggttcgcttatttatttagcagtaactactagtacattta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8361352 tcaattatttataattgatcaatttatacttgttcaatcttagtcacta---gtatttaaggttcgcttatttatttagcagtaactactagtccattta 8361256  T
Q  218 ttacacaatcaagaattaaataagattgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcat 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  8361255 ttacacaatcaagcattaaataagattgtaaatgtttaaattttgctaaattagaaaaatgtcgttttggcctgctgtggctaacaattagcctttgcat 8361156  T
Q  318 tcgtcacagtccacacaaaccagaagctttaattgaatatgttctaagttgaagtttttgaacaagctattacagagacaatatcatgccaagtgacgag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8361155 tcgtcacagtccacacaaaccagaagctttaattgaatatgttctaagttgaagtttttgaacaagctattacagagacaatatcatgccaagtgacgag 8361056  T
Q  418 tccaagttatgattgcagtatatt 441  Q
    ||||||||||||||||||||||||    
T  8361055 tccaagttatgattgcagtatatt 8361032  T

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Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 8410460 - 8410303
Alignment:
Q  243 ttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcattcgtcacagtccacacaaaccagaa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8410460 ttgtaaatgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcattcgtcacagtccacacaaaccagaa 8410361  T
Q  343 gctttaattgaatatgttctaagttgaagtttttgaacaagctattacagagacaata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8410360 gctttaattgaatatgttctaagttgaagtttttgaacaagctattacagagacaata 8410303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 249 - 411
Target Start/End: Complemental strand, 8443248 - 8443086
Alignment:
Q  249 atgtttaaattttgctaaattagaaaaatgtctttttggcctgctgtggctaacaattggcctttgcattcgtcacagtccacacaaaccagaagcttta 348  Q
    ||||||||||||| ||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  8443248 atgtttaaattttcctaaattagaaaaatgttttttttccctgctgtgtctaacaattggcctttgcatttgtcacaatccacacaaaccagaggcttta 8443149  T
Q  349 attgaatatgttctaagttgaagtttttgaacaagctattacagagacaatatcatgccaagt 411  Q
    ||| || |||||| ||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  8443148 attaaagatgttcaaagttgaagtttttgaacaaattattacagagacaatatcaagccaagt 8443086  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 8411439 - 8411341
Alignment:
Q  104 aagctttgtaaggttcaattatttataattgatcaatttatacttgttcaatcttagtcactactagtatttaaggttcgcttatttatttagcagtaac 203  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||   || |||||||||| ||||||||||||||||||||    
T  8411439 aagctttgtaaggttcacttatttataat-gatcaatttatacttgtttaatcttagtcacta---gtttttaaggttcacttatttatttagcagtaac 8411344  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 8410521 - 8410480
Alignment:
Q  125 tttataattgatcaatttatacttgttcaatcttagtcacta 166  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8410521 tttataattgatcaatttatacttgttcaatcttagtcacta 8410480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 8411332 - 8411286
Alignment:
Q  279 tctttttggcctgctgtggctaacaattggcctttgcattcgtcaca 325  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8411332 tctttttggcctgctgtggctaacaattggcctttgaatttgtcaca 8411286  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 8348794 - 8348760
Alignment:
Q  43 gtgcaactttccatatttatctgtaataaacttgt 77  Q
    |||||||||||| ||||||||||||||||||||||    
T  8348794 gtgcaactttccctatttatctgtaataaacttgt 8348760  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 7915265 - 7915306
Alignment:
Q  99 cttataagctttgtaaggttcaattatttataattgatcaat 140  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  7915265 cttataagctttgtaaggtttacttaattataattgatcaat 7915306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 8350168 - 8350127
Alignment:
Q  313 tgcattcgtcacagtccacacaaaccagaagctttaattgaa 354  Q
    |||||| |||||||||||| ||||||||||| ||||||||||    
T  8350168 tgcatttgtcacagtccacccaaaccagaagatttaattgaa 8350127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 8369119 - 8369054
Alignment:
Q  289 ctgctgtggctaacaattggcctttgcattcgtcacagtccacacaaaccagaagctttaattgaa 354  Q
    ||||| |||||||||| || ||| |||||| || |||| ||||||||||||||||||  |||||||    
T  8369119 ctgctatggctaacaaatgacctatgcattggttacagaccacacaaaccagaagctgcaattgaa 8369054  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 8436435 - 8436382
Alignment:
Q  297 gctaacaattggcctttgcattcgtcacagtccacacaaaccagaagctttaat 350  Q
    ||||| ||||||||||| |||| ||||||| |||| ||||||||||| ||||||    
T  8436435 gctaaaaattggcctttccatttgtcacagaccactcaaaccagaagatttaat 8436382  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 8480945 - 8480986
Alignment:
Q  313 tgcattcgtcacagtccacacaaaccagaagctttaattgaa 354  Q
    |||||| |||||||||||| ||||||||||| ||||||||||    
T  8480945 tgcatttgtcacagtccacccaaaccagaagatttaattgaa 8480986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 8527752 - 8527688
Alignment:
Q  297 gctaacaattggcctttgcattcgtcacagtccacacaaaccagaagctttaattgaatatgttc 361  Q
    ||||||||||||||||| |||| |  ||||  || |||||||||||||| |||||||| ||||||    
T  8527752 gctaacaattggccttttcattggaaacagaacatacaaaccagaagctgtaattgaacatgttc 8527688  T

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Target: scaffold0060 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 237 - 403
Target Start/End: Original strand, 68589 - 68761
Alignment:
Q  237 ataagattgtaaatgtttaaattttgctaaattagaaaaatgtctttttg-gcctgctgtggctaacaattggcctttgcattc-----gtcacagtcca 330  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||||  |||  ||||| |||||||||||||||||||||      |||||| ||||    
T  68589 ataagattgcaaatgcttaaattttcctaaattagaaaaatgtctttttttgccgactgtgtctaacaattggcctttgcatttaatttgtcacaatcca 68688  T
Q  331 cacaaaccagaagctttaattgaatatgttctaagttgaagtttttgaacaagctattacagagacaatatca 403  Q
    ||||||||||| ||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  68689 cacaaaccagaggctttaattaaagatgttcaaagttgaagtttttgaacaagttattacagagacaatatca 68761  T

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Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 68491 - 68535
Alignment:
Q  217 attacacaatcaagaattaaataagattgtaaatgtttaaatttt 261  Q
    |||| |||||| || |||||||||||||| |||||||||||||||    
T  68491 attagacaatcgagtattaaataagattgcaaatgtttaaatttt 68535  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 7763030 - 7763115
Alignment:
Q  299 taacaattggcctttgc-attcgtcacagtccacacaaaccagaagctttaattgaatatgttctaagttgaagtttttgaacaag 383  Q
    ||||||||||||||  | ||| || |||| |||||||||| |||| |||||| |||| ||| |||| || ||||||||||||||||    
T  7763030 taacaattggccttcactatttgttacagaccacacaaacaagaaactttaactgaacatgatctaggtcgaagtttttgaacaag 7763115  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 973125 - 973068
Alignment:
Q  297 gctaacaattggcctttgcattcgtcacagtccacacaaaccagaagctttaattgaa 354  Q
    |||||| ||||||||||||||  || |||| ||| |||||||||||||| ||||||||    
T  973125 gctaaccattggcctttgcatcggttacagaccatacaaaccagaagctgtaattgaa 973068  T

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