View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_15 (Length: 409)
Name: NF18655_low_15
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 39 - 393
Target Start/End: Original strand, 47858055 - 47858409
Alignment:
| Q |
39 |
gtttgacattagtcatcatacctggccataatttaggacccctgctgatgggctaagttctatgttgccataccgattaagttgtccatgtccaaaattt |
138 |
Q |
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| T |
47858055 |
gtttgacattagtcatcatacctggccataatttaggacccctgctgatgggctaagttctatgttgccataccgattaagttgtccatgtccaaaattt |
47858154 |
T |
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| Q |
139 |
tggccagcactacattttgtaacgtacatcaaatcggttggcatgagtccaaacccaaggctgtcccaatccacatttgcgtactcatcatcatcgctag |
238 |
Q |
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| T |
47858155 |
tggccagcactacattttgtaacgtacatgaaatcggttggcatgagtccaaacccaaggctgtcccaatccacatttgcgtactcatcatcatcgctgg |
47858254 |
T |
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| Q |
239 |
atttgttgttattttggtacaaattagagaagaacgatgagtcaattaatgcacagtaattccccnnnnnnnnnctttgcaaattacaaatacattgttg |
338 |
Q |
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| T |
47858255 |
atttgttgttattttggtacaaattagagaagaacgatgagtcaattaatgcacagtaattccccaaaaaaaaactttgcaaattacaaatacattgttg |
47858354 |
T |
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| Q |
339 |
ttgagtacatggtgctagttacctgtaagttgggtctggaattggaagaggggag |
393 |
Q |
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| T |
47858355 |
ttgagtacatggtgctagttacctgtaagttgggtctggaattggaagaggggag |
47858409 |
T |
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