View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_16 (Length: 403)
Name: NF18655_low_16
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 11402710 - 11402333
Alignment:
| Q |
19 |
caaacgtggcagaaaattcatatcaaaacactgatgagtcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11402710 |
caaacgtggcagaaaattcatatcaaaacactaatgagtcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaatt |
11402611 |
T |
|
| Q |
119 |
gttttgatctaaattttctgcaatctgtgcatgatgtttatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctct |
218 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11402610 |
gttttgatataaattttttgcaatctgtgcatgatgtttatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctct |
11402511 |
T |
|
| Q |
219 |
cttggttgtaataacttcttcctttgccatatatagttgatagaaccaaaattgtttccaccttttggattgaaattgttctctcttttgatcgaagttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11402510 |
cttggttgtaataacttcttcctttgccatatataattgatagaaccaaaattgtttccaccttttggattgaaattgttctctcttttgatcgaagttt |
11402411 |
T |
|
| Q |
319 |
ccatgtcctctcccatttgattggattcattaatattattgaagttcacttgacttttcaaggcttcctcctttgctt |
396 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11402410 |
tcatgtcctctcccatttgattggattcattaatgttattgaagttcacttgacttttcaaggcttcctcctttgctt |
11402333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 12644017 - 12643834
Alignment:
| Q |
64 |
aaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtttatatct |
163 |
Q |
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| T |
12644017 |
aaagtgtattgcttgctaaaaataaactatatggaatttcataagactcactagt-ttttgatatgaattttctggcatgttttctcgatgtttgtatct |
12643919 |
T |
|
| Q |
164 |
tcaatcgtctgctttgcgctcaaacttttcgcggtgaaaac----ataatttctcctctcttggttgtaataacttcttcctttg |
244 |
Q |
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||||| ||| |||| || |||||||||| ||| |||| ||||||| | ||||||||||||||||| | | |||||||| |
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| T |
12643918 |
gcaatcagctgttttgtgcccaaacttttcatagtggaaacaactataatttgttctctcttggttgtaatatccttttcctttg |
12643834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 247
Target Start/End: Complemental strand, 45966603 - 45966409
Alignment:
| Q |
57 |
tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt |
156 |
Q |
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|||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| | | ||||| | |||| ||||| || | ||| ||||||| |
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| T |
45966603 |
tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt |
45966504 |
T |
|
| Q |
157 |
tatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaa----cataatttctcctctcttggttgtaataacttcttcctttgcca |
247 |
Q |
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| T |
45966503 |
tatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgcca |
45966409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 42912819 - 42913013
Alignment:
| Q |
57 |
tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt |
156 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| | | ||||| | |||| ||||| || | ||| ||||||| |
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| T |
42912819 |
tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt |
42912918 |
T |
|
| Q |
157 |
tatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaa----cataatttctcctctcttggttgtaataacttcttcctttgcca |
247 |
Q |
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||||||| || || |||||||| || || ||||| | | | |||| ||| |||| | ||||||||||||||||||| ||||||| ||||| |
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| T |
42912919 |
tatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgcca |
42913013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 42301189 - 42301083
Alignment:
| Q |
57 |
tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt |
156 |
Q |
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|||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| | | ||||| | |||| ||||| || | ||| ||||||| |
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| T |
42301189 |
tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcctgatgtt |
42301090 |
T |
|
| Q |
157 |
tatatct |
163 |
Q |
| |
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||||||| |
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| T |
42301089 |
tatatct |
42301083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 29281960 - 29282154
Alignment:
| Q |
57 |
tcttgtgaaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtt |
156 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||| || | |||||| | ||||||||| | | ||||| | |||| ||||| || | ||| ||||||| |
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| T |
29281960 |
tcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtt |
29282059 |
T |
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| Q |
157 |
tatatcttcaatcgtctgctttgcgctcaaacttttcgcggtgaaaa----cataatttctcctctcttggttgtaataacttcttcctttgcca |
247 |
Q |
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||||||| || || |||||||| || || ||||| | | | |||| ||| |||| | ||||||||||||||||||| ||||||| ||||| |
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| T |
29282060 |
tatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgcca |
29282154 |
T |
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