View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_17 (Length: 399)
Name: NF18655_low_17
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 48976814 - 48976707
Alignment:
| Q |
243 |
tggtttccctctctctaaatcccttataccctaaatatataaattggtttaccaaatcaatttgttcgatcccctctctctggagtcctctctgaaacgc |
342 |
Q |
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| T |
48976814 |
tggtttccctctctctaaatcccttataccctaaaaa----aattggtttaccaaatcaatttgttcgatcccctctctctggagtcctctctgaaacgc |
48976719 |
T |
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| Q |
343 |
actgttttaaag |
354 |
Q |
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| T |
48976718 |
accgtttaaaag |
48976707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 48977429 - 48977314
Alignment:
| Q |
49 |
cttcaccaaaataaaaaatggaaggtatccctttaatacaattttgcttnnnnnnnnnnn-gataaaatatttgtaagacaatgaatatatagttttggt |
147 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48977429 |
cttcaccaaaataaaaaatggaaggtgttcctttaatgcaattttgcttaaaaaagaaaaagataaaatatttgtaagacaatgaatatatagttttggt |
48977330 |
T |
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| Q |
148 |
gggtcaagtaatgttc |
163 |
Q |
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| T |
48977329 |
gggtcaagtaatgttc |
48977314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 230791 - 230722
Alignment:
| Q |
242 |
ttggtttccctctctctaaatcccttataccctaaatatataaattggtttaccaaatcaatttgttcgatcccc |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| ||| ||||||| |
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| T |
230791 |
ttggtttccctctctctaaatcccttatactctaaa-----aaattgattttccaaatcaattggtttgatcccc |
230722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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