View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_18 (Length: 396)
Name: NF18655_low_18
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34491795 - 34491560
Alignment:
| Q |
1 |
aggttgcaaacgttaaaatatataactattccatgattacaacttaagtgcatattttggaaattctcaaa-----tcagagtgaaattggatccaaatc |
95 |
Q |
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| T |
34491795 |
aggttgcaaacgttaaaatatataactattccatgattacaacttaagtacatattttggaaattctcaaacatgatcagagtgaaattggatccaaatc |
34491696 |
T |
|
| Q |
96 |
ctttaagcaaggtctcaaattgaagtcttatggatgaaataagtgattgaaaggagagacaacattaaagttggccaactaaatttcctaattgatatca |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| | |
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| T |
34491695 |
ctttaagcaaggtctcaaattgaagtcttatggatgaaataagtgattgaaaggagagacagcattaaagttggccaactgaatttcctaatagatatta |
34491596 |
T |
|
| Q |
196 |
gtcattagaaaaattagagtttgtagataacatcat |
231 |
Q |
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||||| ||||||||| |||||||||||||||||||| |
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| T |
34491595 |
gtcatgagaaaaatttgagtttgtagataacatcat |
34491560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 227 - 377
Target Start/End: Complemental strand, 34490592 - 34490442
Alignment:
| Q |
227 |
atcatgataaataaaaaccttgaaatttcaatagttaaataagaatataatttgtagaaaaagtgacaattgtaaagagactgaggggcttttaattttc |
326 |
Q |
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| T |
34490592 |
atcatgataaataaaaaccttgaaatttcaatagttaaataagaatataatttgtagaaaaagtgacaattgtaaagagactgaggggcttttaattttc |
34490493 |
T |
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| Q |
327 |
caaatttattttacaagaacaacattattttttggccgagaagaagaaaaa |
377 |
Q |
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| T |
34490492 |
caaatttattttacaagaacaacattatattttggccgagaagaagaaaaa |
34490442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 27631459 - 27631278
Alignment:
| Q |
196 |
gtcattagaaaaattagagtttgtagataacatcatgataaataaaaaccttgaaatttcaatagttaaataagaatataatttgtagaaaaagtgacaa |
295 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||| |
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| T |
27631459 |
gtcattagaaaaatttgagttagtagataacatcataataaataaaaaccttgaaatttctgtagttaaataagaataaatttcttagaaaaagtgacaa |
27631360 |
T |
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| Q |
296 |
ttgtaaagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttggccgagaagaagaaaaa |
377 |
Q |
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| T |
27631359 |
ttgtaaagagactgaggggcttttaattttccaaatttatttaataagaacaacattaatttttggctgagaagaagaaaaa |
27631278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 34514779 - 34514598
Alignment:
| Q |
196 |
gtcattagaaaaattagagtttgtagataacatcatgataaataaaaaccttgaaatttcaatagttaaataagaatataatttgtagaaaaagtgacaa |
295 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||| |
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| T |
34514779 |
gtcattagaaaaatttgagttagtagataacatcatgataaataaaaaccttgaaatttctgtagttaaataagaataaatttcttagaaaaagtgacaa |
34514680 |
T |
|
| Q |
296 |
ttgtaaagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttggccgagaagaagaaaaa |
377 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| |
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| T |
34514679 |
ttgtgaagagactgaggggcttataattttccaaatttattttataagaacagcattaatttttggctgagaagaagaaaaa |
34514598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 34514912 - 34514779
Alignment:
| Q |
41 |
aacttaagtgcatattttggaaattctcaaa-----tcagagtgaaattggatccaaatcctttaagcaaggtctcaaattgaagtcttatggatgaaat |
135 |
Q |
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| T |
34514912 |
aacttaagtacatattttggaaattctcaaacaggatctgagtgaaattggatctaaatcctttaagcaaggtctcaagttgaagtcttatggatgaaat |
34514813 |
T |
|
| Q |
136 |
aagtgattgaaaggagagacaacattaaagttgg |
169 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34514812 |
aagtgattgaaaggagagacaacattaaagttgg |
34514779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 27631592 - 27631463
Alignment:
| Q |
41 |
aacttaagtgcatattttggaaattctcaaa-----tcagagtgaaattggatccaaatcctttaagcaaggtctcaaattgaagtcttatggatgaaat |
135 |
Q |
| |
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||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
27631592 |
aacttaagtacatattttggaaattctcaaacaggatctgagtgaaattggatttaaatcctttaagcaaggtctcaagttgaagtgttatggatgaaat |
27631493 |
T |
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| Q |
136 |
aagtgattgaaaggagagacaacattaaag |
165 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
27631492 |
aagtgattgaaaggagagacaacattaaag |
27631463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 27625302 - 27625243
Alignment:
| Q |
301 |
aagagactgaggggcttttaattttccaaatttattttacaagaacaacattattttttg |
360 |
Q |
| |
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|||| ||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |
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| T |
27625302 |
aagaaactgaggggattttatttttccaaatttattttgtaagaataaaattattttttg |
27625243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 34511089 - 34511035
Alignment:
| Q |
306 |
actgaggggcttttaattttccaaatttattttacaagaacaacattattttttg |
360 |
Q |
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||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| |
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| T |
34511089 |
actgaggggattttatttttccaaatttattttgtaagaataaaattattttttg |
34511035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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