View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_19 (Length: 387)
Name: NF18655_low_19
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 30781239 - 30780873
Alignment:
| Q |
13 |
aatattagtccatcaaattatggaattgtaaattctgaatctgaacattgtaattgtatttgtacctttaatttcctcaaactacataagataagaaaat |
112 |
Q |
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| T |
30781239 |
aatattagtccatcaaattatggaattgtaaattctgaatctgaacattgtaattgtatttgtacctttaatttcctcaaactacataagataagaaaat |
30781140 |
T |
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| Q |
113 |
taaaacaaaatcaaacccaatttcatcgata---------acattaggcatcgacatctaatgtcaacgaaataactatagctatctgaatcccatcctc |
203 |
Q |
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| T |
30781139 |
taaaacaaaatcaaacccaatttcatcgatacaatgatgaacattaggcatcgacatctaatgtcaacgaaataactatagctatctgaatcccatcctc |
30781040 |
T |
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| Q |
204 |
aatgatttagaaccagaaaccaaaggtttaagcgtcctcttccgagaaatcaaaaatgaattcgaagaaataaaagaagagactccagtgtgtggttgat |
303 |
Q |
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| T |
30781039 |
aatgatttagaaccagaaaccaaaggtttaagcgtcctcttccgagaaatcaacaatgaattcgaagaaataaaagaagagactccagtgtgtggttgat |
30780940 |
T |
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| Q |
304 |
gagaaagagtaaaggtagctgaatttgtaacagaattgttgatgagattagtgatatcagcaagagg |
370 |
Q |
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| T |
30780939 |
gagaaagagtaaaggtagctgaatttgaaacagaattgttgatgagattagtgatatcagcaagagg |
30780873 |
T |
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