View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_2 (Length: 708)
Name: NF18655_low_2
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 34300749 - 34300382
Alignment:
| Q |
1 |
caaaagatagcatgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgtttccatttacaccaaaaatgtgtgtacacagt |
100 |
Q |
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| T |
34300749 |
caaaagatagcatgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgttcccatttacaccaaaaatgtgtgtacacagt |
34300650 |
T |
|
| Q |
101 |
cattaagaacttacaagtatagagcaaattaatattatatgatttaattcatgcacaccgtcaaagattttttatgtagttaatcaatcataaccgtcaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
34300649 |
cattaacaacttacaagtatagagcaaattaatattatatgatttaattcatgcacaccgtcaaagattatttatgtcgttaatcaatcataaccgtcaa |
34300550 |
T |
|
| Q |
201 |
atcataaagat-nnnnnnnnncgtttgaattttctcctaactatttttaaagtcacatatatggttcagtgtaatttgttggtggcgtaattttttaaca |
299 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34300549 |
atcataaagataaaaataaaacgtttgaattttctcctaactatttttaaagtcacatatatggttcagtgtaatttgttggcggcgtaattttttaaca |
34300450 |
T |
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| Q |
300 |
ccggcagtgtattaatctcattgactagaagatcaactagcataggcacatagcatgaatcataaatt |
367 |
Q |
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| T |
34300449 |
ccgacagtgtattaatctcattgactagaagagcaactagcataggcacatagcatgaatcataaatt |
34300382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 440 - 688
Target Start/End: Complemental strand, 34300306 - 34300058
Alignment:
| Q |
440 |
gtttcattagaataataaacctgataaggtaaaaagtaacaagataatgaagaaatgtggtttttacttgggccattgcctaacaccaagttgagtgagc |
539 |
Q |
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| T |
34300306 |
gtttcattagaataataaacctgataaggtaaaaagtaacaagataatgaagaaatgtggtttttacttgggccattgtctaacaccaagttgagtgagc |
34300207 |
T |
|
| Q |
540 |
ttggactcaggagggttgctctcaatcttgattccaagtttttctgtgacagctgctcttacaactcttctctttgttgaatgcaaagttacacttacct |
639 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34300206 |
ttggactcaggagggttgctctcaatcttgattccaagtttttctgtgacagctgctcttacaactcttctctttgttgaatgcaaagttacacttacct |
34300107 |
T |
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| Q |
640 |
tggtagcagtcaaatgtttggtttgtgaggaaaatagagttcctacaca |
688 |
Q |
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| T |
34300106 |
tggtagcagtcaaatgtttggtttgtgaggaaaatagagttcctacaca |
34300058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 538
Target Start/End: Original strand, 20661365 - 20661399
Alignment:
| Q |
504 |
tacttgggccattgcctaacaccaagttgagtgag |
538 |
Q |
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| T |
20661365 |
tacttggaccattgcctaacaccaagttgagtgag |
20661399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 12027511 - 12027446
Alignment:
| Q |
4 |
aagatagcatgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgtt |
69 |
Q |
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|||||| ||||||||| | | |||||| ||||||||||| || |||||||| || ||||||||||| |
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| T |
12027511 |
aagataacatgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgtt |
12027446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 12034431 - 12034366
Alignment:
| Q |
4 |
aagatagcatgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgtt |
69 |
Q |
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|||||| ||||||||| | | |||||| ||||||||||| || |||||||| || ||||||||||| |
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| T |
12034431 |
aagataacatgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgtt |
12034366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 20658446 - 20658511
Alignment:
| Q |
4 |
aagatagcatgtctctgttgcatcatatgtccatgggaaattacttggagggcatccccatctgtt |
69 |
Q |
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|||||| ||||||||| | | |||||| ||||||||||| || |||||||| || ||||||||||| |
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| T |
20658446 |
aagataacatgtctctttggaatcataagtccatgggaatttgcttggaggacaaccccatctgtt |
20658511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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