View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_21 (Length: 345)
Name: NF18655_low_21
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 131 - 329
Target Start/End: Original strand, 8185911 - 8186107
Alignment:
| Q |
131 |
acctaaccctaaaatctcccactttcagaaa-cacaacgctttctctcagttcttcaaacaaattggtttcgttgtttcttccaactctctgcttcaatg |
229 |
Q |
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| T |
8185911 |
acctaaccctaaaatctcccactttcagaaaacacaacgctttctctcagttcttcaaacaaattggtttcgtt---tcttccaactctctgcttcaatg |
8186007 |
T |
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| Q |
230 |
gattctgcatcacctttgttaaatttaccaaatggttgctgggactgtatctgcaaactcctcaccgacaccaacaacgatggcttcgaagactacaacc |
329 |
Q |
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| T |
8186008 |
gattctgcatcacctttgttaaatttaccgaatggttgctgggactgtatctgcaaactcctcaccgacaccaacaacgaaggcttcgaagactacaacc |
8186107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 8185831 - 8185866
Alignment:
| Q |
44 |
ttattttatttttaacatatccaaccttcttttgtc |
79 |
Q |
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| T |
8185831 |
ttattttatttttaacatatgcaaccttcttttgtc |
8185866 |
T |
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