View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_23 (Length: 321)
Name: NF18655_low_23
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 239
Target Start/End: Original strand, 11453682 - 11453819
Alignment:
| Q |
91 |
tgatcggtagacactttcataaaatggattattaatattaatgggataattataaa-gcaacgccaattctaatataaaaactaataacatgttaaatag |
189 |
Q |
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| T |
11453682 |
tgatcggtagatacttctataaaatggattattaatattactgggataattataaaagcaaggctaattctcatataaaagctaataaa----------- |
11453770 |
T |
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| Q |
190 |
tcatgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
239 |
Q |
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| T |
11453771 |
-catgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
11453819 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 11454081 - 11454161
Alignment:
| Q |
234 |
ttccaacttaaggcannnnnnnaaaaaattaccattaatcatgcaatttgattcaac-cacaaaccatctcaacctatgct |
313 |
Q |
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| T |
11454081 |
ttccaacttaaggcatttttaaaaaaaattaccattaatcatgcaatttgattcaacacacaaaccatctcaacctatgct |
11454161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 11453547 - 11453603
Alignment:
| Q |
43 |
caattttgtaaaaaattgcaaatcaataaggtatttagttgaccactttgatcggta |
99 |
Q |
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| T |
11453547 |
caattttgtaaaatattgcaaattattaaggcatcgagttgacgactttgatcggta |
11453603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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