View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_24 (Length: 301)
Name: NF18655_low_24
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 137 - 283
Target Start/End: Original strand, 33965641 - 33965788
Alignment:
| Q |
137 |
aatgtagaaaaatagaaagtattttttgg-ttacatactttgaatgtgatgttcttagcaatgaaataaggtgaattaactgcaaaagttgctgaaccat |
235 |
Q |
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| T |
33965641 |
aatgtagaaaaatagaaagtagtttttgggttacatactttgaatgtgatgttcttggcaatgaaataaggtgaattaactgcaaaagttgctgaaccat |
33965740 |
T |
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| Q |
236 |
atgttcccaatggattccctcttggaccaggtgttgcagcagtgtcac |
283 |
Q |
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| T |
33965741 |
atgttcccaatggattccctcttggaccaggtgttgcagcagtgtcac |
33965788 |
T |
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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 43077458 - 43077381
Alignment:
| Q |
165 |
gttacatactttgaatgtgatgttcttagcaatgaaataaggtgaattaactgcaaaagttgctgaaccatatgttcc |
242 |
Q |
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| T |
43077458 |
gttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcactgcaaaagttgccgaaccataagttcc |
43077381 |
T |
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