View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_25 (Length: 293)
Name: NF18655_low_25
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 52064810 - 52064882
Alignment:
| Q |
159 |
aacctatgcaatataaacacatttaggtcaaataatgagattacattcataatggagtaacaaagcaagattt |
231 |
Q |
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| T |
52064810 |
aacctatgcaatataaacacatttaggtcaaataatgagattacattcataatggagtaacaaagcaagattt |
52064882 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 52064662 - 52064740
Alignment:
| Q |
11 |
cacagactcgaacaccgcacatgacacttacaatctaaaaatttggaaaaatgaattaaataaaagagatagacgtgaa |
89 |
Q |
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| T |
52064662 |
cacagacttgaaaaccgcacacgacacttacaatgtaaaaatttggaaaaatgaattaaataaaagagatacacgtgaa |
52064740 |
T |
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