View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_26 (Length: 290)
Name: NF18655_low_26
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 273
Target Start/End: Complemental strand, 33447351 - 33447113
Alignment:
| Q |
37 |
ctctggaccttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaactgctacttattgtacnnnnnnnn--gtctatcttaca |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33447351 |
ctctggaccttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaattgctacttattgtacttttttttttgtctatcttaca |
33447252 |
T |
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| Q |
135 |
agagagaaaaaagtcttactcattcaagatgtttttaaattacattcaaaagctaactgttacatcatgaaagcataagaacatagacaaaccgtgccgg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33447251 |
agagagaaaaaagtcttactcattcaagatgtttttaaattacattcaaaagttaactgttatatcatgaaagcataagaacatagacaaaccgtgccgg |
33447152 |
T |
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| Q |
235 |
aaagggcataggcaacaactaatggaggagaagcaaggt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33447151 |
aaagggcataggcaacaactaatggaggagaagcaaggt |
33447113 |
T |
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