View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_27 (Length: 283)
Name: NF18655_low_27
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16537552 - 16537283
Alignment:
| Q |
1 |
atcttataagaattatagatcggtctaagctttagtgtttccttatatatagaaacattatatactgtatcccaaacaaattgaaccgaactcgaaaacc |
100 |
Q |
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| T |
16537552 |
atcttataagatttatagatcggtctaagctttagtgtttccttatatatagaaacaatatatattgtatcccaaataaattgaaccgaactcgaaaacc |
16537453 |
T |
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| Q |
101 |
ctaaaccattctaatttcttctttgaaccttgccctaaagaattgatcgttaatccttctttgaaccttgccttaaagaattgatcgttagctcaaccat |
200 |
Q |
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| T |
16537452 |
ctaaaccattctaatttcttatttgaaccttgccctaaagaattgatcgttaattcttctttgaaccttgccttaaagaattgatcgttagctcaaccat |
16537353 |
T |
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| Q |
201 |
ggaaaccttcatcaacctagatgtgagtcccgtcaccaaaccaatcttatctaagtcacaagacatttct |
270 |
Q |
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| T |
16537352 |
ggaaaccttcatcaacctagatgtgagtcccgtcaccaaaccaatcttatctaagtcacaagacatttct |
16537283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 16543235 - 16542996
Alignment:
| Q |
24 |
tctaagctttagtgtttccttatatatagaaacattatatactgtatcccaaacaaattgaaccgaactcgaaaaccctaaaccattctaatttcttctt |
123 |
Q |
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| T |
16543235 |
tctaagctttagtgttttcctatatatagaaacaatatatattgtatcccaaacaaattgaaccgaactcgaaaaccctaaaccattctaatttcttctt |
16543136 |
T |
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| Q |
124 |
tgaaccttgccctaaagaattgatcgttaatccttctttgaaccttgccttaaagaattgatcgttagctcaaccatggaaaccttcatcaacctagatg |
223 |
Q |
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| T |
16543135 |
tgaaccttgccctaaagaattgattgttaattcttctttaaaccttgccctaaagaa-------ttagctcaaccatggaaaccttcatcaacctagatg |
16543043 |
T |
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| Q |
224 |
tgagtcccgtcaccaaaccaatcttatctaagtcacaagacatttct |
270 |
Q |
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| T |
16543042 |
tgagtcctgtcaccgaaccaatcttatctaagtcacaagacatttct |
16542996 |
T |
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