View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_3 (Length: 579)
Name: NF18655_low_3
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 34675747 - 34675618
Alignment:
| Q |
142 |
atttctatgtttagcaaaatgacaggaaattacaaggtggcatatcattattattagatacaaagggaaattgtttggaaacattttgcaaatcaacata |
241 |
Q |
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| T |
34675747 |
atttctatgtttagcaaaatgacaggaaattacaaggtggcatatcattattattagatacaaagggaaattgtttggaaacattttgcaaatcaacata |
34675648 |
T |
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| Q |
242 |
agaaaagtggcttaatcttagatgccataa |
271 |
Q |
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| T |
34675647 |
agaaaagtggcttaatcttagatgccataa |
34675618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 34676019 - 34675891
Alignment:
| Q |
17 |
atcatcaacacgtgtaaagaaatatttgtatcctaaaattgaaatgatagaataagggcaccacaaattagcatgcatgatatcaaaaggagcaatatat |
116 |
Q |
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| T |
34676019 |
atcatcaacacgtgtaaggaaatatttgtatcccaaaattgaaatgatagaataagggcaccacaaattagcatgcatgatatcaaaaggagcaatatat |
34675920 |
T |
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| Q |
117 |
ttggatacactacgtgcaaaaggtaattt |
145 |
Q |
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| T |
34675919 |
ttggatacactacgtgcaaaaggtaattt |
34675891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 34675571 - 34675469
Alignment:
| Q |
283 |
gtctatgacatataatccacattgaagattaaca-ctagttgggtttttcgtgggattcctccctatgtttttgaagaaagactttcgtcataataagct |
381 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675571 |
gtctatgacatataatccacattgaagattaacatctagttgggtttttggtgggattcctccctatgtttttgaagaaagactttcgtcataataagct |
34675472 |
T |
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| Q |
382 |
tgg |
384 |
Q |
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||| |
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| T |
34675471 |
tgg |
34675469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 450 - 550
Target Start/End: Complemental strand, 34675402 - 34675302
Alignment:
| Q |
450 |
tctattctatcctttttaatgatatttcttgagataccataaatgataggtgttagtgtcggggtgcaaacatagttgaaatattatttccaccaaaaga |
549 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34675402 |
tctattctatcttttttaatgatatttcttgagataccgtaaatgataggtgttagtgtcggggtgcaaacatagttgaaatattatttccactaaaaga |
34675303 |
T |
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| Q |
550 |
t |
550 |
Q |
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| T |
34675302 |
t |
34675302 |
T |
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