View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_33 (Length: 250)
Name: NF18655_low_33
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 10551416 - 10551351
Alignment:
| Q |
169 |
agaacaaggtttcataggagaagaaatggagtcagaagatcaagctacaaataaaagaatgaaaga |
234 |
Q |
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| T |
10551416 |
agaaaaaggtttcataggagaagaaatggagtcagaagatcaagctacaaataaaagaatgaaaga |
10551351 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10551471 - 10551419
Alignment:
| Q |
1 |
aattgaacattgagcgtgccaaattataaaaaatttacttgagaaaatacata |
53 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10551471 |
aattgaacattgagcgtcccaaattataaaaaatttacttgagaaaatacata |
10551419 |
T |
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