View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_34 (Length: 249)
Name: NF18655_low_34
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30107117 - 30106879
Alignment:
| Q |
1 |
aaaataataaaatgttgcattagtatcctaaggtgacaattattttaagaccgatnnnnnnnntgcagaagtgactattattatgaaacagagcggagta |
100 |
Q |
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| T |
30107117 |
aaaataataaaatgttgcattagtatcctaaggtgacaattattttaagacggataaaaaaa-tgcagaagtgactattattatgaaacagagcggagta |
30107019 |
T |
|
| Q |
101 |
attactaacaattgtttatccaatttttgttttaaacaagctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattccta |
200 |
Q |
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| T |
30107018 |
attactaacaattgtttgtccaatttttgatttaaacaagctaaataatataagtcatttatcctaagccatctatagtatagatacatcttcattccta |
30106919 |
T |
|
| Q |
201 |
tgctgaaaatcaagcacaaaacataatgaatcaagtataa |
240 |
Q |
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| T |
30106918 |
tgctgaaaatcaagcacaaaacataatgaatcaagtataa |
30106879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 34100696 - 34100736
Alignment:
| Q |
10 |
aaatgttgcattagtatcctaaggtgacaattattttaaga |
50 |
Q |
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| T |
34100696 |
aaatgttgcattagtattgtaaagtgacaattattttaaga |
34100736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43410407 - 43410361
Alignment:
| Q |
1 |
aaaataataaaatgttgcattagtatcctaaggtgacaattattttaa |
48 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||||| |
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| T |
43410407 |
aaaataataaa-tgttgcattagtattctaaagtgacaattattttaa |
43410361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5272270 - 5272318
Alignment:
| Q |
1 |
aaaataataaaatgttgcattagtatcctaaggtgacaattattttaaga |
50 |
Q |
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|
||||||||||| ||||||||| |||| |||| |||||||||||||||||| |
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| T |
5272270 |
aaaataataaa-tgttgcatttgtattctaaagtgacaattattttaaga |
5272318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49224123 - 49224167
Alignment:
| Q |
1 |
aaaataataaaatgttgcattagtatcctaaggtgacaattatttt |
46 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
49224123 |
aaaataataaa-tgttgcattagtattctaaagtgacaattatttt |
49224167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 396754 - 396794
Alignment:
| Q |
10 |
aaatgttgcattagtatcctaaggtgacaattattttaaga |
50 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| |
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| T |
396754 |
aaatgttgcattggtattctaaagtgacaattattttaaga |
396794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 10180090 - 10180130
Alignment:
| Q |
10 |
aaatgttgcattagtatcctaaggtgacaattattttaaga |
50 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| |
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| T |
10180090 |
aaatgttgcattggtattctaaagtgacaattattttaaga |
10180130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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