View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_38 (Length: 244)
Name: NF18655_low_38
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 36496960 - 36497105
Alignment:
| Q |
1 |
tggatgctcttgtatttaattgaaactcatttgtcttttatttatttatttgattaaaactattaacgatttgagtgcatcggttaaaaatgaatagaat |
100 |
Q |
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| T |
36496960 |
tggatgctcttgtatttaattgaaactcatttgtcttttatttatttatttgattaaaactattaaccatttaagtgcatcagttaaaaatgaatagaat |
36497059 |
T |
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| Q |
101 |
tttacaataattattaagaagattgttgtgcataatatgactttga |
146 |
Q |
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| T |
36497060 |
tttacaataattattaagaagattgttgtgcataatatgactttga |
36497105 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 36497455 - 36497509
Alignment:
| Q |
172 |
aataaactgaattctgttttaactaatgatttgtaaagattttgacacctgatct |
226 |
Q |
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| T |
36497455 |
aataaactgaattctgttttaactaatgatttgtaaagattttgacacctgatct |
36497509 |
T |
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