View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18655_low_4 (Length: 545)
Name: NF18655_low_4
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Complemental strand, 33447847 - 33447336
Alignment:
| Q |
14 |
gaatatagagttgaagcaggaactgaaagcctatcccacataggattgccctttgtaatagtctcataaatgctcttgaacatgtcaggcaatacataag |
113 |
Q |
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| T |
33447847 |
gaatagagagttgaagcaggaactgaaagcctatcccacataggattgccctttgtaatagtctcataaatgctcttgaacatgtcaggcaatacataag |
33447748 |
T |
|
| Q |
114 |
tttgaagagcctatatgcgtgtaacaagaaatatacatgtcaaagtctaattattaaatgatattcagagtaaattaacaatataacattgatctcatag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33447747 |
tttgaagagcctatatgcgtgtaacaagaaatatacatgtcaaagtctaattattaaatgatattcagagtaaattaacaatattacattgatctcatag |
33447648 |
T |
|
| Q |
214 |
cttagtttctgnnnnnnnctacctttgaaacctcttcattacttggccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctc |
313 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447647 |
cttaatttctgtttttttctacctttgaaacctcttcattacttggccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctc |
33447548 |
T |
|
| Q |
314 |
ttcatagaagttgatgtcaacctgaaatgtaaattgtccttgagctaaaatttaaattaagcatgaatttaaaagtgtcgaagattcaaaaatcattgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33447547 |
ttcatagaagttgatgtcaacctgaaatgtaaattgtccttgagctaaaatttaaattaagcatgaatttaaaagtgtagaagattcaaaaatcattgaa |
33447448 |
T |
|
| Q |
414 |
atgattcaggaaaactgaaactcgtatagttaccaagtgnnnnnnnnatagacaaatggtagtaatgatatgttatgtttgtagtcgggatttcaactct |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447447 |
atgattcaggaaaactgaaactcgtatagttaccaagtgttttttttatagacaaatggtagtaatgatatgttatgtttgtagtcgggatttcaactct |
33447348 |
T |
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| Q |
514 |
tgaccttattct |
525 |
Q |
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||||||||||| |
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| T |
33447347 |
ggaccttattct |
33447336 |
T |
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