View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18655_low_52 (Length: 219)

Name: NF18655_low_52
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18655_low_52
NF18655_low_52
[»] chr1 (1 HSPs)
chr1 (19-202)||(32161081-32161263)
[»] chr2 (12 HSPs)
chr2 (37-193)||(30036479-30036635)
chr2 (37-193)||(30230617-30230773)
chr2 (37-193)||(30024062-30024218)
chr2 (37-193)||(30117904-30118060)
chr2 (37-193)||(30132661-30132817)
chr2 (114-193)||(30082468-30082547)
chr2 (37-187)||(30172962-30173112)
chr2 (37-187)||(30183066-30183216)
chr2 (37-187)||(30791205-30791355)
chr2 (108-187)||(30151362-30151441)
chr2 (110-187)||(30280513-30280590)
chr2 (81-192)||(30069138-30069249)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 32161263 - 32161081
Alignment:
Q  19 atgtttgagatgtacatggagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattag 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32161263 atgtttgagatgtacgtggagaggggaagaacataattaagggctttgcattcaataactcccaataggcagatgtttcggaacttgatgctttcattag 32161164  T
Q  119 gattcccataccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaaccttacatgcatac 202  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32161163 gatt-ccatgccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaaccttatatgcatac 32161081  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 30036479 - 30036635
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| ||||| |||| |||||||| ||| ||||||||||||  |||||||  ||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  30036479 gagagaggaaggacatgattaagggttttacattcaataactttcaataggaagatgttttgaaacttgaagctttcattaggattcccactccatatgt 30036578  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30036579 gttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30036635  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 30230617 - 30230773
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| ||||| |||| |||||||| ||| ||||||||||||  |||||||  ||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  30230617 gagagaggaaggacatgattaagggttttacattcaataactttcaataggaagatgttttgaaacttgaagctttcattaggattcccactccatatgt 30230716  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30230717 gttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30230773  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 30024218 - 30024062
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| ||||| |||| |||||||| ||| ||||||||||||  |||| ||  ||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  30024218 gagagaggaaggacatgattaagggttttacattcaataactttcaattggaagatgttttgaaacttgaagctttcattaggattcccactccatatgt 30024119  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30024118 gttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30024062  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 30117904 - 30118060
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| ||||| |||| |||||||| ||| ||||||||||||  |||| ||  ||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  30117904 gagagaggaaggacatgattaagggttttacattcaataactttcaattggaagatgttttgaaacttgaagctttcattaggattcccactccatatgt 30118003  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30118004 gttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30118060  T

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Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 30132661 - 30132817
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| ||||| |||| |||||||| ||| ||||||||||||  |||| ||  ||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  30132661 gagagaggaaggacatgattaagggttttacattcaataactttcaattggaagatgttttgaaacttgaagctttcattaggattcccactccatatgt 30132760  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    | || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30132761 gttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30132817  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 30082547 - 30082468
Alignment:
Q  114 attaggattcccataccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatccaacctta 193  Q
    |||||||||||||  ||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30082547 attaggattcccactccatatgtgttttaacatcggtaaatttttcaaagtgagagttttcaattgcatatccagcctta 30082468  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 30173112 - 30172962
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    ||||| |||| ||||| |||||||  |||||||||| |||||  |||| ||| ||||||| | ||||||| | ||| ||||||||||||   ||||||||    
T  30173112 gagagaggaaaaacatgattaaggtttttgcattcagtaactttcaattggcagatgttttgaaacttgaagattttattaggattcccgctccatatgt 30173013  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatcca 187  Q
    | |||| |||||||||||  |||| ||||||||||  ||||||||| ||||    
T  30173012 gtttcagcatcggtaaatgtttcagagtgagagttcgcaattgcatttcca 30172962  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 30183066 - 30183216
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    |||||||| | ||||||||| |||  || |||| || |||||  ||| |||| || |||| ||||||| |  ||||||||||||||||||  ||| ||||    
T  30183066 gagaggggcaaaacataattgaggctttcgcatccagtaacttgcaaaaggcagaggttttggaacttaacactttcattaggattcccactccaaatgt 30183165  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatcca 187  Q
    | |||| |||||||||||  ||||||||||||||| |||||||||| ||||    
T  30183166 gtttcagcatcggtaaatggttcaaagtgagagttctcaattgcatttcca 30183216  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 30791355 - 30791205
Alignment:
Q  37 gagaggggaagaacataattaagggctttgcattcaataactcccaataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgt 136  Q
    |||| ||||| ||||| |||||||  | |||||||| |||||  ||||| || || ||||   ||| ||| ||| |||||||||||||||  |||||| |    
T  30791355 gagaagggaaaaacatgattaaggcttctgcattcagtaactttcaatatgcagaggttttcaaacgtgaagctgtcattaggattcccactccatattt 30791256  T
Q  137 gcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatcca 187  Q
    |||||| ||| |||||||| ||||||||||||||| |||||||||| ||||    
T  30791255 gcttcagcattggtaaatttttcaaagtgagagttctcaattgcatttcca 30791205  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 30151441 - 30151362
Alignment:
Q  108 gctttcattaggattcccataccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatcca 187  Q
    |||||||||||||||||||| |||||| || |||| |   |||||||| ||||||||||||||| |||||| ||||||||    
T  30151441 gctttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatcca 30151362  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 30280590 - 30280513
Alignment:
Q  110 tttcattaggattcccataccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgcatatcca 187  Q
    |||||||||||||||||| |||||| || |||| |   |||||||| ||||||||||||||| |||||| ||||||||    
T  30280590 tttcattaggattcccattccatatatgtttcagcgatggtaaatttttcaaagtgagagttctcaatttcatatcca 30280513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 30069249 - 30069138
Alignment:
Q  81 caataggctgatgtttcggaacttgatgctttcattaggattcccataccatatgtgcttcaacatcggtaaattcttcaaagtgagagttttcaattgc 180  Q
    |||||||| || |||| | ||| ||| |||||||||||||||||||  |||||| ||  ||||||| |||||||  |||||| |||||||| |||| |||    
T  30069249 caataggcagaggttttgaaacatgaagctttcattaggattcccactccatatatgtctcaacattggtaaatgtttcaaactgagagttctcaactgc 30069150  T
Q  181 atatccaacctt 192  Q
    || |||| ||||    
T  30069149 atttccagcctt 30069138  T

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