View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18655_low_7 (Length: 490)
Name: NF18655_low_7
Description: NF18655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18655_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 12670106 - 12670587
Alignment:
| Q |
1 |
cagctttagatttataaatagaaattttatgtatattattataatataaagtaaagtttttcagatgatcaaagtaaaatatagaaaaagctagtatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670106 |
cagctttagatttataaatagaaattttatgtatattattataatataaagtaaggtttttcagatgatcaaagtaaaatatagaaaaagctagtatata |
12670205 |
T |
|
| Q |
101 |
aagatatgcctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670206 |
aagatatgcctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaag |
12670305 |
T |
|
| Q |
201 |
tctagtagtacctttgacaaatttgtcttttggtttcatctttgagaccacttttttcctcactactctatttctatttcaagaaagtaagtgaaagatn |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670306 |
tctagtagtacctttgacaaatttgtcttttggtttcatctttgagacaacttttttcctcactactctatttctatttcaagaaagtaagtgaaagata |
12670405 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnngagtttttgttttggtaagataggaggaaagtgaggaaatgaagatgattataagggaagnnnnnnnnggaaagatgagtgca |
400 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
12670406 |
gaagagaagagagagaggaatttttgttatggtaagataggaggaaagtgaggaaatgaagatgtttataagggaag-aaaaaaaggaaagatgagtgca |
12670504 |
T |
|
| Q |
401 |
tgaggaggctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgtc |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670505 |
tgaggaggctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgtc |
12670587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University